Strain Fitness in Pseudomonas putida KT2440 around PP_3133

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,547,797	+		PP_3132	0.54	-1.1
3,547,798	-		PP_3132	0.54	-0.1
3,547,810	+		PP_3132	0.55	+1.0
3,547,852	-		PP_3132	0.58	+0.4
3,547,852	-		PP_3132	0.58	-0.8
3,547,852	-		PP_3132	0.58	-1.9
3,548,067	+		PP_3132	0.73	+0.3
3,548,128	+		PP_3132	0.78	+1.2
3,548,129	-		PP_3132	0.78	-0.1
3,548,129	-		PP_3132	0.78	-2.4
3,548,138	+		PP_3132	0.79	+0.6
3,548,139	-		PP_3132	0.79	-1.3
3,548,139	-		PP_3132	0.79	-0.7
3,548,181	+		PP_3132	0.82	+0.4
3,548,316	+				+1.2
3,548,316	+				+0.7
3,548,317	-				+0.4
3,548,317	-				-2.2
3,548,317	-				-1.3
3,548,317	-				-0.8
3,548,337	-				-0.8
3,548,365	+				-0.4
3,548,366	-				+1.2
3,548,462	+				+0.0
3,548,516	+		PP_5588	0.19	+0.3
3,548,516	+		PP_5588	0.19	+0.3
3,548,620	+		PP_5588	0.73	-1.2
3,548,621	-		PP_5588	0.73	-1.8
3,548,621	-		PP_5588	0.73	-0.7
3,548,635	+		PP_5588	0.81	-0.8
3,548,649	+		PP_5588	0.88	-3.2
3,548,649	+		PP_5588	0.88	+0.7
3,548,711	+				-0.9
3,548,748	+				-1.5
3,548,748	+				-2.3
3,548,749	-				-1.4
3,548,749	-				-2.1
3,548,787	+				-0.9
3,548,788	-				-0.3
3,548,788	-				-1.0
3,548,788	-				-4.2
3,548,817	-		PP_3133	0.10	-1.3
3,548,840	+		PP_3133	0.12	-0.1
3,548,840	+		PP_3133	0.12	-0.9
3,548,840	+		PP_3133	0.12	-0.9
3,548,870	+		PP_3133	0.14	-2.0
3,548,870	+		PP_3133	0.14	-0.5
3,548,871	-		PP_3133	0.14	-0.5
3,549,152	+		PP_3133	0.33	+0.8
3,549,152	+		PP_3133	0.33	-1.1
3,549,152	+		PP_3133	0.33	-1.9
3,549,157	+		PP_3133	0.33	-1.6
3,549,158	-		PP_3133	0.33	-1.3
3,549,202	+		PP_3133	0.36	-0.6
3,549,202	+		PP_3133	0.36	-0.3
3,549,203	-		PP_3133	0.36	-0.9
3,549,203	-		PP_3133	0.36	-0.9
3,549,267	-		PP_3133	0.41	-0.6
3,549,267	-		PP_3133	0.41	+2.2
3,549,267	-		PP_3133	0.41	-1.1
3,549,425	-		PP_3133	0.52	+0.3
3,549,425	-		PP_3133	0.52	-1.0
3,549,479	+		PP_3133	0.55	+0.5
3,549,480	-		PP_3133	0.55	-0.5
3,549,480	-		PP_3133	0.55	-1.0
3,549,480	-		PP_3133	0.55	+1.0
3,549,480	-		PP_3133	0.55	+0.4
3,549,480	-		PP_3133	0.55	-1.2
3,549,482	+		PP_3133	0.55	-0.4
3,549,482	+		PP_3133	0.55	+1.6
3,549,482	+		PP_3133	0.55	-0.7
3,549,482	+		PP_3133	0.55	+0.2
3,549,483	-		PP_3133	0.55	-3.5
3,549,509	+		PP_3133	0.57	-0.5
3,549,509	+		PP_3133	0.57	-2.8
3,549,510	-		PP_3133	0.57	-0.7
3,549,510	-		PP_3133	0.57	+0.3
3,549,564	-		PP_3133	0.61	+0.2
3,549,779	-		PP_3133	0.76	-2.0
3,550,005	-				+1.0
3,550,005	-				+0.4
3,550,005	-				-1.1
3,550,005	-				-0.7
3,550,145	+				-0.3
3,550,146	-				-0.4
3,550,146	-				+1.2
3,550,146	-				+0.2
3,550,175	+				-0.1
3,550,176	-				-2.4
3,550,238	+		PP_3134	0.12	-1.5
3,550,239	-		PP_3134	0.12	+0.1
3,550,306	-		PP_3134	0.22	+0.4
3,550,306	-		PP_3134	0.22	-0.8
3,550,347	+				-0.7
3,550,347	+		PP_3134	0.28	-1.2
3,550,347	+		PP_3134	0.28	+0.5
3,550,348	-		PP_3134	0.28	-0.1
3,550,348	-		PP_3134	0.28	+0.3
3,550,401	-		PP_3134	0.36	+0.4
3,550,432	+		PP_3134	0.40	-0.0
3,550,436	+		PP_3134	0.41	-0.9
3,550,436	+		PP_3134	0.41	+0.9
3,550,437	-		PP_3134	0.41	-0.8
3,550,493	-		PP_3134	0.49	+0.9
3,550,493	-		PP_3134	0.49	+0.6
3,550,493	-		PP_3134	0.49	-3.1
3,550,668	+		PP_3134	0.74	-0.6
3,550,668	+		PP_3134	0.74	+0.6
3,550,669	-		PP_3134	0.74	-4.3
3,550,669	-		PP_3134	0.74	-1.7
3,550,743	+		PP_3134	0.85	-1.1
3,550,782	+				+0.2
3,550,782	+				-0.1
3,550,783	-				-0.0
3,550,827	+				-0.0
3,550,827	+				-2.8
3,550,957	+		PP_3135	0.11	-1.3
3,550,958	-		PP_3135	0.11	+0.7
3,551,101	+				-1.5
3,551,102	-		PP_3135	0.26	+1.4
3,551,102	-		PP_3135	0.26	-2.8
3,551,102	-		PP_3135	0.26	+0.9
3,551,102	-		PP_3135	0.26	-0.5
3,551,102	-		PP_3135	0.26	+0.6
3,551,119	-		PP_3135	0.28	+0.4