Strain Fitness in Pseudomonas putida KT2440 around PP_2140

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,443,179	+		PP_2139	0.89	-2.6
2,443,179	+		PP_2139	0.89	-3.0
2,443,179	+		PP_2139	0.89	-2.8
2,443,180	-				-1.0
2,443,386	+				-0.8
2,443,386	+				-2.5
2,443,386	+				-2.4
2,443,387	-				-1.2
2,443,434	+				-1.3
2,443,464	-				-2.9
2,443,518	+				+0.9
2,443,529	+				+0.1
2,443,529	+				+0.9
2,443,540	+				+0.8
2,443,540	+				-0.9
2,443,540	+				+0.6
2,443,541	-				+0.1
2,443,578	+		PP_2140	0.16	-4.1
2,443,710	+		PP_2140	0.38	-0.3
2,443,710	+		PP_2140	0.38	-0.7
2,443,711	-		PP_2140	0.38	-2.5
2,443,711	-		PP_2140	0.38	-1.1
2,443,711	-		PP_2140	0.38	-3.0
2,443,752	+		PP_2140	0.45	-1.6
2,443,811	+		PP_2140	0.55	+0.7
2,443,891	-		PP_2140	0.68	-3.3
2,443,891	-		PP_2140	0.68	-0.3
2,444,034	-				-0.4
2,444,096	-				+0.5
2,444,101	-				-0.2
2,444,128	+				-1.2
2,444,128	+				-0.4
2,444,128	+				-0.2
2,444,128	+				+0.8
2,444,128	+				+1.2
2,444,129	-				+0.4
2,444,129	-				+0.2
2,444,129	-				+0.4
2,444,129	-				-3.6
2,444,129	-				+0.8
2,444,135	-				-0.3
2,444,377	-				-1.4
2,444,465	-		PP_2142	0.11	+1.2
2,444,595	+		PP_2142	0.38	+0.2
2,444,595	+		PP_2142	0.38	+0.2
2,444,596	-		PP_2142	0.38	+0.2