Strain Fitness in Pseudomonas putida KT2440 around PP_1271

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,450,996	+		PP_1270	0.20	-1.9
1,450,996	+		PP_1270	0.20	-1.1
1,450,997	-		PP_1270	0.20	-0.5
1,451,314	+		PP_1270	0.55	+0.0
1,451,315	-		PP_1270	0.55	-3.7
1,451,319	-		PP_1270	0.55	-1.4
1,451,319	-		PP_1270	0.55	+0.7
1,451,351	-		PP_1270	0.59	-0.4
1,451,351	-		PP_1270	0.59	-1.1
1,451,555	-		PP_1270	0.81	-1.6
1,451,555	-		PP_1270	0.81	-0.5
1,451,555	-		PP_1270	0.81	+0.4
1,451,631	+		PP_1270	0.90	+0.2
1,451,631	+		PP_1270	0.90	-0.1
1,451,631	+		PP_1270	0.90	-1.5
1,451,631	+		PP_1270	0.90	+0.3
1,451,632	-				-0.1
1,451,795	+				-0.2
1,451,832	+				-0.6
1,451,832	+				-1.8
1,451,832	+				-1.7
1,452,061	+		PP_1271	0.14	-2.5
1,452,061	+		PP_1271	0.14	-0.8
1,452,061	+		PP_1271	0.14	-1.8
1,452,062	-		PP_1271	0.14	-1.6
1,452,302	-				-0.0
1,452,379	+		PP_1271	0.35	-1.0
1,452,640	+		PP_1271	0.52	-0.6
1,452,988	+		PP_1271	0.75	-2.5
1,452,997	+		PP_1271	0.75	-1.1
1,452,997	+		PP_1271	0.75	-3.2
1,453,271	+				-1.6
1,453,272	-				-3.3
1,453,292	-				-0.2
1,453,292	-				+0.3
1,453,526	+		PP_1272	0.14	+0.3
1,453,527	-		PP_1272	0.14	+0.7
1,453,527	-		PP_1272	0.14	-0.9
1,453,527	-		PP_1272	0.14	-3.1
1,453,527	-		PP_1272	0.14	-0.6
1,453,541	+		PP_1272	0.16	+1.5
1,453,542	-		PP_1272	0.16	-0.4
1,453,542	-		PP_1272	0.16	-2.3
1,453,650	-		PP_1272	0.26	+0.1
1,453,689	+		PP_1272	0.29	-1.0
1,453,690	-		PP_1272	0.29	-0.8
1,454,033	+		PP_1272	0.60	+0.2
1,454,033	+		PP_1272	0.60	-0.0
1,454,062	+		PP_1272	0.63	-1.7
1,454,063	-		PP_1272	0.63	+0.0
1,454,097	-		PP_1272	0.66	-1.0
1,454,097	-		PP_1272	0.66	+0.2
1,454,147	+		PP_1272	0.71	+0.3
1,454,147	+		PP_1272	0.71	+0.6
1,454,147	+		PP_1272	0.71	-0.5
1,454,147	+		PP_1272	0.71	-2.8
1,454,147	+		PP_1272	0.71	-4.0
1,454,147	+		PP_1272	0.71	-1.0
1,454,147	+		PP_1272	0.71	-0.9
1,454,148	-		PP_1272	0.71	-1.7
1,454,148	-		PP_1272	0.71	-0.2
1,454,148	-		PP_1272	0.71	+0.1
1,454,148	-		PP_1272	0.71	-0.0
1,454,148	-		PP_1272	0.71	+0.7
1,454,187	+		PP_1272	0.74	-1.1
1,454,187	+		PP_1272	0.74	-0.1
1,454,187	+		PP_1272	0.74	+0.8
1,454,188	-		PP_1272	0.74	-1.6