Strain Fitness in Pseudomonas putida KT2440 around PP_5408

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
6,168,165	+		PP_5407	0.78	+0.3
6,168,241	+		PP_5407	0.83	+0.8
6,168,572	-				-0.2
6,168,813	-				+0.6
6,168,813	-				+0.1
6,168,813	-				+0.4
6,168,839	+				-2.3
6,168,839	+				-2.0
6,168,840	-				+0.3
6,168,875	-				+0.7
6,168,875	-				-0.3
6,168,875	-				+0.5
6,168,882	+				+2.0
6,168,882	+				+0.5
6,168,883	-				+0.4
6,168,901	+				+1.0
6,168,902	-				-0.0
6,168,959	+				+1.0
6,168,959	+				-1.7
6,168,959	+				-3.1
6,168,959	+				+0.8
6,168,959	+				+0.7
6,169,065	+				+1.4
6,169,065	+				+0.6
6,169,066	-				-0.0
6,169,066	-				+0.0
6,169,071	+				-0.3
6,169,083	+				+0.7
6,169,109	+				+1.3
6,169,109	+				+0.7
6,169,110	-				-0.1
6,169,110	-				+0.3
6,169,114	+				-0.2
6,169,114	+				-0.1
6,169,145	+				+1.1
6,169,146	-				+1.1
6,169,146	-				+1.3
6,169,236	+		PP_5408	0.10	+0.7
6,169,294	+		PP_5408	0.15	+1.5
6,169,295	-		PP_5408	0.15	-1.6
6,169,360	-		PP_5408	0.21	-0.8
6,169,465	-		PP_5408	0.30	+0.3
6,169,483	-		PP_5408	0.31	-1.6
6,169,508	+		PP_5408	0.33	+0.2
6,169,611	-		PP_5408	0.42	-0.4
6,169,727	-		PP_5408	0.52	+0.1
6,169,786	-		PP_5408	0.57	-0.7
6,169,816	-		PP_5408	0.59	-1.3
6,169,816	-		PP_5408	0.59	-1.6
6,169,868	-		PP_5408	0.64	+0.6
6,169,905	+		PP_5408	0.67	-0.4
6,169,906	-		PP_5408	0.67	-0.8
6,169,906	-		PP_5408	0.67	-0.7
6,169,906	-		PP_5408	0.67	-1.1
6,169,906	-		PP_5408	0.67	-0.6
6,169,906	-		PP_5408	0.67	-1.4
6,169,953	-		PP_5408	0.71	-0.8
6,169,978	+		PP_5408	0.73	-2.1
6,170,064	-		PP_5408	0.80	-0.4
6,170,211	+				+1.0
6,170,212	-				+0.8
6,170,254	+				+1.6
6,170,254	+				-0.4
6,170,407	+				-0.1
6,170,407	+				-0.4
6,170,408	-				-0.8
6,170,408	-				+0.1
6,170,428	-				+0.4
6,170,461	-				-2.9