Strain Fitness in Pseudomonas putida KT2440 around PP_3429

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,883,173	+		PP_3428	0.18	-0.4
3,883,173	+		PP_3428	0.18	-1.4
3,883,173	+		PP_3428	0.18	+0.1
3,883,173	+		PP_3428	0.18	-0.4
3,883,208	-		PP_3428	0.21	+1.3
3,883,225	+		PP_3428	0.23	-1.2
3,883,225	+		PP_3428	0.23	+0.3
3,883,439	-		PP_3428	0.43	-1.1
3,883,439	-		PP_3428	0.43	-0.5
3,883,471	+		PP_3428	0.46	+0.7
3,883,472	-		PP_3428	0.46	-0.4
3,883,472	-		PP_3428	0.46	+0.3
3,883,535	-		PP_3428	0.52	-0.3
3,883,535	-				-1.4
3,883,628	+		PP_3428	0.61	+0.1
3,883,628	+		PP_3428	0.61	-0.4
3,883,721	-		PP_3428	0.70	-0.0
3,883,727	+		PP_3428	0.71	-0.3
3,883,727	+		PP_3428	0.71	-0.6
3,883,728	-		PP_3428	0.71	-0.1
3,883,762	+		PP_3428	0.74	-0.4
3,883,763	-		PP_3428	0.74	-2.0
3,883,816	+		PP_3428	0.79	-0.2
3,883,816	+		PP_3428	0.79	-0.0
3,883,825	-		PP_3428	0.80	-1.9
3,883,825	-		PP_3428	0.80	-1.9
3,883,939	+				+0.4
3,883,976	+				-0.6
3,884,036	-				+0.7
3,884,182	-				+0.9
3,884,509	+		PP_3429	0.24	-1.9
3,884,844	+		PP_3429	0.45	+0.7
3,884,844	+				+2.9
3,884,847	-		PP_3429	0.45	-0.6
3,884,847	-				-1.2
3,884,847	-		PP_3429	0.45	-1.2
3,884,856	+		PP_3429	0.46	-0.5
3,884,856	+		PP_3429	0.46	-1.7
3,884,857	-		PP_3429	0.46	-0.9
3,885,097	+		PP_3429	0.61	-0.8
3,885,098	-		PP_3429	0.61	-0.6
3,885,223	+		PP_3429	0.68	-1.5
3,885,224	-		PP_3429	0.69	-2.5
3,885,224	-		PP_3429	0.69	-0.8
3,885,252	+		PP_3429	0.70	-0.9
3,885,252	+		PP_3429	0.70	-1.7
3,885,252	+				+0.3
3,885,253	-		PP_3429	0.70	+0.5
3,885,253	-		PP_3429	0.70	-0.2
3,885,298	+		PP_3429	0.73	-0.5
3,885,298	+				-2.3
3,885,332	-		PP_3429	0.75	-0.1
3,885,719	+				+0.6
3,885,719	+				-0.9
3,885,719	+				-0.2
3,885,719	+				-1.5
3,885,723	+				-0.5
3,885,741	-				+0.2
3,886,046	+		PP_3430	0.14	+0.8
3,886,223	+		PP_3430	0.23	-0.3
3,886,250	+				+1.3
3,886,250	+		PP_3430	0.24	+0.7
3,886,250	+		PP_3430	0.24	-0.7
3,886,251	-		PP_3430	0.24	-0.1
3,886,251	-		PP_3430	0.24	-1.0
3,886,251	-		PP_3430	0.24	-0.6
3,886,301	+		PP_3430	0.27	+0.7
3,886,376	+		PP_3430	0.30	-0.8
3,886,376	+		PP_3430	0.30	+0.4
3,886,376	+		PP_3430	0.30	-1.8
3,886,377	-		PP_3430	0.30	-0.4
3,886,511	-		PP_3430	0.36	+0.4
3,886,615	+				+1.3
3,886,615	+		PP_3430	0.41	-3.1
3,886,615	+		PP_3430	0.41	+0.3
3,886,616	-		PP_3430	0.41	+0.1
3,886,730	+		PP_3430	0.47	-0.4
3,886,730	+		PP_3430	0.47	+0.2
3,886,731	-		PP_3430	0.47	-1.7
3,886,731	-		PP_3430	0.47	-0.2