Strain Fitness in Pseudomonas putida KT2440 around PP_2845

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,247,500	+		PP_2842	0.72	+0.4
3,247,561	-		PP_2842	0.79	+0.5
3,247,729	+				+0.5
3,247,838	+		PP_2843	0.31	+0.7
3,248,193	+		PP_2844	0.40	-0.5
3,248,194	-		PP_2844	0.40	+0.6
3,248,194	-		PP_2844	0.40	-0.2
3,248,316	+		PP_2844	0.78	-0.6
3,248,337	+		PP_2844	0.85	-1.1
3,248,338	-				+1.0
3,248,338	-		PP_2844	0.85	+0.4
3,248,389	+				+0.4
3,248,495	+				+0.2
3,248,496	-				+0.0
3,249,052	+		PP_2845	0.39	-2.0
3,249,053	-		PP_2845	0.39	-0.3
3,249,196	+		PP_2845	0.48	-0.5
3,249,291	-		PP_2845	0.53	-1.4
3,249,291	-		PP_2845	0.53	-1.0
3,249,560	+		PP_2845	0.69	-2.3
3,249,588	-		PP_2845	0.71	-1.2
3,249,599	+		PP_2845	0.71	+0.2
3,249,600	-		PP_2845	0.72	-0.0
3,249,798	-		PP_2845	0.83	-1.8
3,249,940	-				-0.2
3,250,001	+				-1.5
3,250,002	-				-0.5
3,250,114	+				+0.0
3,250,114	+				+1.1
3,250,114	+				-0.1
3,250,115	-				+0.1
3,250,117	-				-0.4
3,250,473	+		PP_2846	0.75	+0.5
3,250,473	+		PP_2846	0.75	+0.1
3,250,473	+		PP_2846	0.75	-0.4
3,250,515	-		PP_2846	0.84	-0.3
3,250,575	+				-0.1
3,250,990	-		PP_2847	0.68	+0.9
3,250,990	-		PP_2847	0.68	+1.4