Strain Fitness in Pseudomonas putida KT2440 around PP_2563

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,921,499	-				-0.5
2,921,499	-				+0.6
2,921,505	-				+0.1
2,921,719	+				-0.3
2,921,719	+				-0.8
2,921,720	-				-0.5
2,921,720	-				-0.7
2,921,720	-				+0.1
2,921,744	-				-0.7
2,922,069	+		PP_2562	0.21	+0.2
2,922,069	+		PP_2562	0.21	+1.1
2,922,070	-		PP_2562	0.21	-0.9
2,922,215	+		PP_2562	0.51	+0.0
2,922,215	+		PP_2562	0.51	-0.8
2,922,215	+		PP_2562	0.51	+1.7
2,922,216	-		PP_2562	0.51	-0.0
2,922,235	-		PP_2562	0.55	+0.6
2,922,342	+		PP_2562	0.77	+0.1
2,922,342	+		PP_2562	0.77	-0.6
2,922,342	+		PP_2562	0.77	-1.3
2,922,342	+		PP_2562	0.77	+0.0
2,922,343	-		PP_2562	0.77	+0.7
2,922,343	-		PP_2562	0.77	-0.1
2,922,453	-				-0.1
2,922,453	-				+0.4
2,922,578	+				+0.1
2,922,578	+				-0.5
2,922,677	+				+0.7
2,922,677	+				+0.3
2,922,678	-				-1.9
2,922,678	-				-0.4
2,922,681	+				-2.0
2,922,682	-				-0.4
2,922,682	-				-0.0
2,922,683	+				-0.2
2,922,683	+				-0.1
2,922,683	+				+0.9
2,922,684	+				+0.7
2,922,684	-				+0.7
2,922,684	-				+0.9
2,922,684	-				-0.5
2,922,684	-				-0.1
2,922,684	-				+0.1
2,922,684	-				-1.3
2,922,684	-				-1.1
2,922,684	-				-0.2
2,922,734	-				-0.8
2,922,791	+		PP_2563	0.11	-0.4
2,922,791	+		PP_2563	0.11	+0.0
2,922,791	+		PP_2563	0.11	-1.3
2,922,791	+		PP_2563	0.11	-1.0
2,922,791	+		PP_2563	0.11	-0.5
2,922,792	-		PP_2563	0.11	-0.5
2,922,792	-		PP_2563	0.11	-0.0
2,922,799	-		PP_2563	0.11	+0.1
2,922,799	-		PP_2563	0.11	-1.9
2,922,922	+		PP_2563	0.16	+0.0
2,922,923	-		PP_2563	0.16	+0.6
2,922,923	-		PP_2563	0.16	-0.1
2,922,923	-		PP_2563	0.16	+0.1
2,922,923	-		PP_2563	0.16	+0.7
2,922,979	+		PP_2563	0.18	-0.3
2,923,130	+		PP_2563	0.23	-1.1
2,923,136	+		PP_2563	0.24	-0.8
2,923,136	+		PP_2563	0.24	-0.0
2,923,137	-		PP_2563	0.24	-1.4
2,923,213	+		PP_2563	0.26	+0.7
2,923,235	+		PP_2563	0.27	-0.8
2,923,235	+		PP_2563	0.27	-0.0
2,923,235	+		PP_2563	0.27	-0.7
2,923,235	+		PP_2563	0.27	+0.3
2,923,695	+		PP_2563	0.44	-2.7
2,923,695	+		PP_2563	0.44	-0.6
2,923,695	+		PP_2563	0.44	-0.4
2,923,695	+		PP_2563	0.44	-0.4
2,923,696	-		PP_2563	0.44	+0.2
2,923,793	+				+1.3
2,923,793	+		PP_2563	0.47	-0.7
2,923,794	-		PP_2563	0.47	-0.5
2,923,863	-		PP_2563	0.50	+0.1
2,923,918	+		PP_2563	0.52	-0.7
2,923,919	-		PP_2563	0.52	+1.0
2,924,033	+		PP_2563	0.56	-0.3
2,924,033	+		PP_2563	0.56	-0.9
2,924,033	+		PP_2563	0.56	-0.3
2,924,033	+		PP_2563	0.56	+0.4
2,924,034	-		PP_2563	0.56	-0.5
2,924,148	-		PP_2563	0.60	-2.0
2,924,148	-		PP_2563	0.60	+1.0
2,924,284	-		PP_2563	0.65	-0.6
2,924,369	+		PP_2563	0.68	-1.0
2,924,369	+		PP_2563	0.68	+0.4
2,924,370	-		PP_2563	0.68	-0.0
2,924,408	+		PP_2563	0.70	+0.1
2,924,409	-		PP_2563	0.70	-0.6
2,924,760	-		PP_2563	0.82	-0.7
2,925,005	+				+1.0
2,925,005	+				-0.1
2,925,007	+				-0.5
2,925,213	-				+0.3
2,925,302	+				+1.0
2,925,303	-				-1.5
2,925,303	-				-0.3
2,925,386	-				-2.1
2,925,957	-		PP_2564	0.20	-0.2
2,926,179	+		PP_2564	0.52	+0.3
2,926,179	+				+2.9
2,926,180	-		PP_2564	0.52	-0.4
2,926,185	+		PP_2564	0.53	+1.5
2,926,186	-		PP_2564	0.53	-0.7
2,926,192	-		PP_2564	0.54	+1.0