Experiment: R2A with Fusaric 240 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0737 and PP_0738 are separated by 115 nucleotides PP_0738 and PP_0739 overlap by 4 nucleotides PP_0739 and PP_0740 overlap by 10 nucleotides PP_0740 and PP_0741 overlap by 11 nucleotides
PP_0737: PP_0737 - lipid A 3-O-deacylase, at 856,052 to 856,570
_0737
PP_0738: PP_0738 - conserved protein of unknown function, at 856,686 to 857,384
_0738
PP_0739: PP_0739 - deoxyribodipyrimidine photolyase, at 857,381 to 858,823
_0739
PP_0740: PP_0740 - Transcriptional regulator, MerR family, at 858,814 to 859,713
_0740
PP_0741: PP_0741 - conserved protein of unknown function, at 859,703 to 860,671
_0741
Position (kb) 857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 856.533 kb on + strand at 856.533 kb on + strand at 856.534 kb on - strand at 856.534 kb on - strand at 856.553 kb on + strand at 856.554 kb on - strand at 856.611 kb on + strand at 856.612 kb on - strand at 856.622 kb on + strand at 856.623 kb on - strand at 856.623 kb on - strand at 856.634 kb on + strand at 856.635 kb on - strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.668 kb on + strand at 856.669 kb on - strand at 856.669 kb on - strand at 856.709 kb on + strand at 856.709 kb on + strand at 856.709 kb on + strand at 856.710 kb on - strand at 856.710 kb on - strand at 856.710 kb on - strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.712 kb on + strand at 856.713 kb on - strand at 856.852 kb on - strand, within PP_0738 at 856.889 kb on + strand, within PP_0738 at 857.113 kb on + strand, within PP_0738 at 857.113 kb on + strand, within PP_0738 at 857.114 kb on - strand, within PP_0738 at 857.358 kb on - strand at 857.369 kb on + strand at 857.378 kb on + strand at 857.390 kb on + strand at 857.462 kb on + strand at 857.462 kb on + strand at 857.462 kb on + strand at 857.462 kb on + strand at 857.463 kb on - strand at 857.463 kb on - strand at 857.463 kb on - strand at 857.463 kb on - strand at 857.463 kb on - strand at 857.474 kb on + strand at 857.474 kb on + strand at 857.474 kb on + strand at 857.475 kb on - strand at 857.478 kb on + strand at 857.479 kb on - strand at 857.485 kb on + strand at 857.486 kb on - strand at 857.489 kb on - strand at 857.509 kb on + strand at 857.509 kb on + strand at 857.546 kb on + strand, within PP_0739 at 857.628 kb on + strand, within PP_0739 at 857.628 kb on + strand, within PP_0739 at 857.628 kb on + strand, within PP_0739 at 857.971 kb on - strand, within PP_0739 at 857.988 kb on - strand, within PP_0739 at 858.118 kb on + strand, within PP_0739 at 858.119 kb on - strand, within PP_0739 at 858.260 kb on + strand, within PP_0739 at 858.391 kb on - strand, within PP_0739 at 858.410 kb on + strand, within PP_0739 at 858.410 kb on + strand, within PP_0739 at 858.411 kb on - strand, within PP_0739 at 858.411 kb on - strand, within PP_0739 at 858.411 kb on - strand, within PP_0739 at 858.520 kb on - strand, within PP_0739 at 858.520 kb on - strand, within PP_0739 at 858.565 kb on + strand, within PP_0739 at 858.664 kb on + strand, within PP_0739 at 858.665 kb on - strand, within PP_0739 at 858.832 kb on + strand at 858.832 kb on + strand at 858.832 kb on + strand at 858.832 kb on + strand at 858.832 kb on + strand at 858.833 kb on - strand at 858.838 kb on + strand at 858.838 kb on + strand at 858.838 kb on + strand at 858.838 kb on + strand at 858.839 kb on - strand at 859.039 kb on + strand, within PP_0740 at 859.040 kb on - strand, within PP_0740 at 859.136 kb on - strand, within PP_0740 at 859.153 kb on + strand, within PP_0740 at 859.154 kb on - strand, within PP_0740 at 859.154 kb on - strand, within PP_0740 at 859.154 kb on - strand, within PP_0740 at 859.154 kb on - strand, within PP_0740 at 859.154 kb on - strand, within PP_0740 at 859.230 kb on - strand, within PP_0740 at 859.230 kb on - strand, within PP_0740 at 859.298 kb on + strand, within PP_0740 at 859.298 kb on + strand, within PP_0740 at 859.299 kb on - strand, within PP_0740 at 859.299 kb on - strand, within PP_0740 at 859.749 kb on + strand at 859.750 kb on - strand at 859.750 kb on - strand at 859.750 kb on - strand at 859.750 kb on - strand at 859.767 kb on + strand at 859.817 kb on + strand, within PP_0741 at 859.817 kb on + strand, within PP_0741 at 859.818 kb on - strand, within PP_0741
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL remove 856,533 + +0.4 856,533 + -0.1 856,534 - +0.1 856,534 - -0.3 856,553 + -1.0 856,554 - -0.6 856,611 + -0.1 856,612 - -0.5 856,622 + -0.5 856,623 - -0.2 856,623 - +0.4 856,634 + +0.6 856,635 - -0.4 856,668 + -0.3 856,668 + +0.2 856,668 + -0.3 856,668 + -0.1 856,669 - -0.0 856,669 - -1.5 856,709 + -0.6 856,709 + -2.5 856,709 + -0.1 856,710 - +0.4 856,710 - -0.1 856,710 - +0.0 856,712 + +0.2 856,712 + +0.3 856,712 + -0.7 856,712 + +0.0 856,712 + -0.2 856,712 + -2.7 856,713 - +0.2 856,852 - PP_0738 0.24 -0.2 856,889 + PP_0738 0.29 -0.9 857,113 + PP_0738 0.61 -0.7 857,113 + PP_0738 0.61 -3.2 857,114 - PP_0738 0.61 +0.1 857,358 - -0.3 857,369 + -1.4 857,378 + -0.6 857,390 + -0.3 857,462 + -0.7 857,462 + +2.1 857,462 + +0.3 857,462 + -0.3 857,463 - -0.3 857,463 - +0.4 857,463 - +0.2 857,463 - -1.4 857,463 - -1.2 857,474 + -0.2 857,474 + +0.6 857,474 + +2.1 857,475 - +0.5 857,478 + -0.1 857,479 - -0.7 857,485 + +0.7 857,486 - -0.3 857,489 - -1.0 857,509 + -0.4 857,509 + +0.6 857,546 + PP_0739 0.11 -0.9 857,628 + PP_0739 0.17 -0.1 857,628 + PP_0739 0.17 -1.0 857,628 + PP_0739 0.17 -0.3 857,971 - PP_0739 0.41 -0.9 857,988 - PP_0739 0.42 +0.5 858,118 + PP_0739 0.51 -1.6 858,119 - PP_0739 0.51 -0.4 858,260 + PP_0739 0.61 -1.0 858,391 - PP_0739 0.70 +0.4 858,410 + PP_0739 0.71 +0.6 858,410 + PP_0739 0.71 -0.5 858,411 - PP_0739 0.71 -0.6 858,411 - PP_0739 0.71 -0.7 858,411 - PP_0739 0.71 -0.4 858,520 - PP_0739 0.79 +0.5 858,520 - PP_0739 0.79 +0.0 858,565 + PP_0739 0.82 -0.5 858,664 + PP_0739 0.89 -0.7 858,665 - PP_0739 0.89 -1.2 858,832 + +0.2 858,832 + -0.4 858,832 + -0.3 858,832 + +0.4 858,832 + +0.4 858,833 - +0.1 858,838 + -0.4 858,838 + +0.4 858,838 + -0.0 858,838 + +0.2 858,839 - +0.5 859,039 + PP_0740 0.25 +1.8 859,040 - PP_0740 0.25 -1.6 859,136 - PP_0740 0.36 -0.0 859,153 + PP_0740 0.38 +0.9 859,154 - PP_0740 0.38 -0.6 859,154 - PP_0740 0.38 +0.5 859,154 - PP_0740 0.38 +0.4 859,154 - PP_0740 0.38 +0.4 859,154 - PP_0740 0.38 +0.2 859,230 - PP_0740 0.46 +0.3 859,230 - PP_0740 0.46 -1.0 859,298 + PP_0740 0.54 -1.3 859,298 + PP_0740 0.54 -0.4 859,299 - PP_0740 0.54 -2.1 859,299 - PP_0740 0.54 +0.3 859,749 + -0.0 859,750 - -0.3 859,750 - +0.8 859,750 - -0.2 859,750 - -0.7 859,767 + +0.4 859,817 + PP_0741 0.12 -0.9 859,817 + PP_0741 0.12 -0.7 859,818 - PP_0741 0.12 -0.4
Or see this region's nucleotide sequence