Experiment: R2A with Fusaric 240 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4708 and PP_5705 are separated by 15 nucleotides PP_5705 and PP_4709 are separated by 19 nucleotides PP_4709 and PP_4710 are separated by 93 nucleotides
PP_4708: PP_4708 - Polyribonucleotide nucleotidyltransferase, at 5,352,011 to 5,354,116
_4708
PP_5705: PP_5705 - protein of unknown function, at 5,354,132 to 5,354,347
_5705
PP_4709: PP_4709 - 30S ribosomal subunit protein S15, at 5,354,367 to 5,354,690
_4709
PP_4710: PP_4710 - tRNA pseudouridine 55 synthase, at 5,354,784 to 5,355,701
_4710
Position (kb) 5354
5355 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5354.209 kb on - strand, within PP_5705 at 5354.282 kb on - strand, within PP_5705 at 5354.282 kb on - strand, within PP_5705 at 5354.726 kb on - strand at 5354.933 kb on - strand, within PP_4710 at 5354.933 kb on - strand, within PP_4710 at 5354.933 kb on - strand, within PP_4710 at 5355.116 kb on - strand, within PP_4710 at 5355.116 kb on - strand, within PP_4710 at 5355.165 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.167 kb on - strand, within PP_4710 at 5355.187 kb on - strand, within PP_4710 at 5355.237 kb on - strand, within PP_4710 at 5355.240 kb on - strand, within PP_4710 at 5355.240 kb on - strand, within PP_4710 at 5355.240 kb on - strand, within PP_4710 at 5355.240 kb on - strand, within PP_4710 at 5355.267 kb on + strand, within PP_4710 at 5355.267 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.325 kb on + strand, within PP_4710 at 5355.326 kb on - strand, within PP_4710 at 5355.329 kb on + strand, within PP_4710 at 5355.329 kb on + strand, within PP_4710 at 5355.329 kb on + strand, within PP_4710 at 5355.329 kb on + strand, within PP_4710 at 5355.330 kb on - strand, within PP_4710 at 5355.337 kb on - strand, within PP_4710 at 5355.337 kb on - strand, within PP_4710
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL remove 5,354,209 - PP_5705 0.36 -0.1 5,354,282 - PP_5705 0.69 +1.3 5,354,282 - PP_5705 0.69 +0.9 5,354,726 - -1.0 5,354,933 - PP_4710 0.16 -0.0 5,354,933 - PP_4710 0.16 +0.4 5,354,933 - PP_4710 0.16 +1.3 5,355,116 - PP_4710 0.36 +1.1 5,355,116 - PP_4710 0.36 +0.6 5,355,165 - PP_4710 0.42 -0.3 5,355,167 - PP_4710 0.42 -1.5 5,355,167 - PP_4710 0.42 -1.8 5,355,167 - PP_4710 0.42 +0.1 5,355,167 - PP_4710 0.42 +0.7 5,355,167 - PP_4710 0.42 -1.4 5,355,187 - PP_4710 0.44 +0.1 5,355,237 - PP_4710 0.49 -2.1 5,355,240 - PP_4710 0.50 +2.1 5,355,240 - PP_4710 0.50 -1.0 5,355,240 - PP_4710 0.50 -2.0 5,355,240 - PP_4710 0.50 -1.2 5,355,267 + PP_4710 0.53 -2.4 5,355,267 + PP_4710 0.53 +0.8 5,355,325 + PP_4710 0.59 +0.0 5,355,325 + PP_4710 0.59 +0.3 5,355,325 + PP_4710 0.59 -0.2 5,355,325 + PP_4710 0.59 -1.9 5,355,325 + PP_4710 0.59 +0.9 5,355,326 - PP_4710 0.59 -0.8 5,355,329 + PP_4710 0.59 -0.6 5,355,329 + PP_4710 0.59 -0.1 5,355,329 + PP_4710 0.59 -0.7 5,355,329 + PP_4710 0.59 -0.8 5,355,330 - PP_4710 0.59 +1.7 5,355,337 - PP_4710 0.60 -0.6 5,355,337 - PP_4710 0.60 +1.1
Or see this region's nucleotide sequence