Strain Fitness in Pseudomonas putida KT2440 around PP_5682

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
5,044,743	-				-0.1
5,044,743	-				-0.8
5,044,743	-				+0.5
5,044,743	-				+0.3
5,044,808	+				+1.5
5,044,809	-				-0.4
5,044,819	+				+0.0
5,044,819	+				-0.2
5,044,819	+				-0.6
5,044,866	+				-0.9
5,044,867	-				-0.5
5,044,930	-				-1.8
5,044,934	+				-0.2
5,044,934	+				+0.6
5,044,934	+				-1.5
5,044,934	+				-2.1
5,044,935	-				+1.5
5,045,042	+		PP_5681	0.34	+1.1
5,045,043	-		PP_5681	0.34	-3.0
5,045,044	+		PP_5681	0.35	-0.6
5,045,045	-		PP_5681	0.35	-2.0
5,045,045	-		PP_5681	0.35	-3.1
5,045,045	-		PP_5681	0.35	+0.2
5,045,045	-		PP_5681	0.35	+0.8
5,045,130	-		PP_5681	0.71	+0.3
5,045,259	+				+0.6
5,045,293	+				-0.0
5,045,298	+				-0.5
5,045,312	-				+0.8
5,045,312	-				+0.5
5,045,325	-				+1.4
5,045,329	+				+2.2
5,045,330	-				-0.4
5,045,381	-				-1.1
5,045,393	+				-1.5
5,045,393	+				+1.2
5,045,393	+				-1.3
5,045,475	+		PP_4449	0.38	+0.3
5,045,476	-		PP_4449	0.38	+0.3
5,045,530	+		PP_4449	0.59	+0.9
5,045,531	-		PP_4449	0.60	+0.0
5,045,570	+		PP_4449	0.75	+0.7
5,045,570	+		PP_4449	0.75	+0.4
5,045,625	+				+1.0
5,045,625	+				-0.7
5,045,626	-				+0.5
5,045,626	-				-0.8
5,045,702	+				-1.6
5,045,727	+				-0.8
5,045,728	-				+0.1
5,045,728	-				+0.3
5,045,735	+				+0.2
5,045,735	+				-2.3
5,045,736	-				+0.3
5,045,761	+		PP_5682	0.17	+1.7
5,045,776	+		PP_5682	0.24	+1.6
5,045,834	+		PP_5682	0.51	-0.4
5,045,835	-		PP_5682	0.52	-1.0
5,045,835	-		PP_5682	0.52	+0.4
5,045,860	-		PP_5682	0.64	-0.3
5,045,866	+		PP_5682	0.67	+1.5
5,045,866	+		PP_5682	0.67	+1.6
5,045,867	-		PP_5682	0.67	+0.4
5,045,867	-		PP_5682	0.67	+1.7
5,045,867	-		PP_5682	0.67	-0.3
5,045,889	+		PP_5682	0.78	+0.3
5,045,890	-		PP_5682	0.78	-1.6
5,045,890	-		PP_5682	0.78	+1.2
5,045,890	-		PP_5682	0.78	+0.6
5,045,910	-		PP_5682	0.88	+1.4
5,045,996	+				-0.5
5,045,997	-				+0.7
5,046,004	-				+0.1
5,046,018	+				-0.4
5,046,019	-				+0.1
5,046,019	-				-0.5
5,046,019	-				+0.0
5,046,019	-				+0.8
5,046,019	-				-1.1
5,046,038	-				-0.1
5,046,053	+				-0.6
5,046,053	+				-0.9
5,046,054	-				+2.2
5,046,175	-		PP_4450	0.21	+1.1
5,046,292	+		PP_4450	0.40	+0.3
5,046,292	+		PP_4450	0.40	-0.1
5,046,293	-		PP_4450	0.40	+1.5
5,046,293	-		PP_4450	0.40	+0.2
5,046,293	-		PP_4450	0.40	+0.8
5,046,355	+		PP_4450	0.50	-0.3
5,046,356	-		PP_4450	0.50	-1.3
5,046,356	-		PP_4450	0.50	+0.3
5,046,356	-		PP_4450	0.50	-0.7
5,046,420	-		PP_4450	0.60	+1.3
5,046,471	+		PP_4450	0.68	+0.3
5,046,471	+		PP_4450	0.68	+0.5
5,046,472	-		PP_4450	0.68	-0.1
5,046,555	+		PP_4450	0.82	-1.3
5,046,555	+		PP_4450	0.82	+0.4
5,046,556	-		PP_4450	0.82	+0.3
5,046,556	-		PP_4450	0.82	-0.8
5,046,556	-		PP_4450	0.82	-0.5
5,046,574	+		PP_4450	0.85	+0.8
5,046,574	+		PP_4450	0.85	+1.0
5,046,574	+		PP_4450	0.85	-0.3
5,046,613	+				+0.5
5,046,613	+				-1.1
5,046,617	+				+0.9
5,046,618	-				-3.6
5,046,618	-				+0.5
5,046,664	+				-0.3
5,046,664	+				-0.1
5,046,675	+				+0.8
5,046,676	-				-0.4
5,046,676	-				+1.2
5,046,676	-				-0.6
5,046,686	+				-3.5
5,046,686	+				+0.5
5,046,719	-				+0.5
5,046,752	-				-0.4
5,046,759	+				+1.2
5,046,760	-				-1.1
5,046,760	-				-0.5
5,046,760	-				-0.8
5,046,760	-				+0.7
5,046,819	+		PP_5683	0.15	-0.8
5,046,820	-		PP_5683	0.16	-0.0
5,046,820	-		PP_5683	0.16	-0.1
5,046,820	-		PP_5683	0.16	+0.8
5,046,857	+		PP_5683	0.31	+0.5
5,046,857	+		PP_5683	0.31	-0.5
5,046,867	+		PP_5683	0.35	+0.8
5,046,867	+		PP_5683	0.35	+0.5
5,046,891	+		PP_5683	0.46	+1.5