Strain Fitness in Pseudomonas putida KT2440 around PP_5339

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
6,086,016	+		PP_5338	0.78	-2.5
6,086,017	-		PP_5338	0.78	-1.7
6,086,161	-		PP_5338	0.88	-2.2
6,086,186	+				-1.5
6,086,186	+				-0.3
6,086,365	+				+1.3
6,086,366	-				-3.6
6,086,366	-				-0.0
6,086,366	-				+1.9
6,086,478	+				-1.6
6,086,478	+				-0.0
6,086,478	+				+1.4
6,086,478	+				+0.5
6,086,479	-				-0.1
6,086,479	-				+0.6
6,086,479	-				+0.3
6,086,513	+				+0.6
6,086,514	-				-0.4
6,086,514	-				-0.9
6,086,550	-				-0.1
6,086,791	+		PP_5339	0.29	-2.2
6,086,938	+		PP_5339	0.43	+0.4
6,087,082	+		PP_5339	0.56	+1.6
6,087,159	+		PP_5339	0.63	+0.9
6,087,186	+		PP_5339	0.66	+0.2
6,087,379	+		PP_5339	0.84	-2.6
6,087,380	-		PP_5339	0.84	+1.0
6,087,452	-				-1.5
6,087,584	+				-1.2
6,087,585	-				+0.2
6,087,585	-				+1.1
6,087,624	+				+0.2
6,087,624	+				-0.8
6,087,624	+				-0.9
6,087,624	+				+1.0
6,087,624	+				+1.2
6,087,625	-				-0.1
6,087,625	-				-1.1
6,087,655	+				-0.1
6,087,655	+				-3.9
6,087,691	-				+1.1
6,087,691	-				-0.9
6,087,692	+				-1.0
6,087,792	-				+0.1
6,087,792	-				-0.8
6,088,109	+		PP_5340	0.32	-0.5
6,088,112	+		PP_5340	0.32	-0.8
6,088,112	+		PP_5340	0.32	+0.2
6,088,112	+		PP_5340	0.32	+1.4
6,088,112	+		PP_5340	0.32	+1.7
6,088,112	+		PP_5340	0.32	+0.3
6,088,113	-		PP_5340	0.32	-3.0
6,088,113	-		PP_5340	0.32	-0.7
6,088,113	-		PP_5340	0.32	-1.2
6,088,113	-		PP_5340	0.32	+0.3
6,088,164	-		PP_5340	0.37	-0.2
6,088,286	+		PP_5340	0.49	+0.0
6,088,286	+		PP_5340	0.49	-0.3
6,088,287	-		PP_5340	0.49	+0.8
6,088,287	-		PP_5340	0.49	-0.3
6,088,287	-		PP_5340	0.49	+0.2
6,088,294	+		PP_5340	0.49	-0.7
6,088,294	+		PP_5340	0.49	-0.3
6,088,295	-		PP_5340	0.49	-1.2
6,088,364	+		PP_5340	0.56	+0.3
6,088,365	-		PP_5340	0.56	+1.1
6,088,365	-		PP_5340	0.56	-0.2
6,088,397	+		PP_5340	0.59	-1.3
6,088,398	-		PP_5340	0.59	+0.5
6,088,398	-		PP_5340	0.59	+2.7
6,088,469	+		PP_5340	0.66	-0.7
6,088,505	+		PP_5340	0.70	-2.6
6,088,505	+		PP_5340	0.70	-0.9
6,088,505	+		PP_5340	0.70	-1.1
6,088,517	+		PP_5340	0.71	-1.3
6,088,518	-		PP_5340	0.71	+0.0