Strain Fitness in Pseudomonas putida KT2440 around PP_4873

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
5,540,435	+		PP_4872	0.77	+0.7
5,540,436	-		PP_4872	0.77	-1.9
5,540,495	+		PP_4872	0.79	-0.1
5,540,495	+		PP_4872	0.79	+0.0
5,540,496	-		PP_4872	0.79	+0.3
5,540,496	-		PP_4872	0.79	+0.8
5,540,496	-		PP_4872	0.79	+2.2
5,540,519	+		PP_4872	0.80	+1.0
5,540,519	+		PP_4872	0.80	-3.3
5,540,519	+		PP_4872	0.80	+0.4
5,540,520	-		PP_4872	0.80	-4.0
5,540,520	-		PP_4872	0.80	-0.7
5,540,520	-		PP_4872	0.80	+1.4
5,540,570	+		PP_4872	0.82	+0.7
5,540,571	-		PP_4872	0.82	-2.8
5,540,571	-		PP_4872	0.82	-1.0
5,540,606	+		PP_4872	0.84	+1.2
5,540,606	+		PP_4872	0.84	+1.3
5,540,607	-		PP_4872	0.84	+0.3
5,540,786	+				+1.3
5,540,786	+				-0.1
5,540,787	-				+1.4
5,540,787	-				+1.0
5,540,787	-				+2.1
5,540,895	-				+0.2
5,540,903	+				-0.7
5,540,909	+				+0.9
5,540,910	-				-0.4
5,540,910	-				+1.2
5,540,976	+				+0.7
5,540,976	+				+0.6
5,540,976	+				-0.0
5,540,976	+				+0.8
5,540,979	-				+1.0
5,541,090	+				-1.5
5,541,275	-				-1.6
5,541,275	-				+0.3
5,541,275	-				+2.0
5,541,289	+				-0.0
5,541,298	+				+1.1
5,541,299	-				+1.2
5,541,299	-				-1.4
5,541,299	-				+0.1
5,541,302	+				+0.6
5,541,302	+				-4.1
5,541,303	-				+1.7
5,541,324	-				+1.0
5,542,803	+				-1.0
5,542,804	-				+0.3
5,542,804	-				-1.8
5,542,813	+				-1.2
5,542,815	-				-2.8
5,542,821	+				-2.8
5,542,837	-				-1.1
5,542,837	-				-2.5
5,542,872	+		PP_4874	0.13	-1.8
5,542,873	-		PP_4874	0.14	-2.5
5,542,879	+		PP_4874	0.15	-0.6
5,543,195	+		PP_4874	0.86	-2.9
5,543,409	+		PP_4875	0.15	-1.4
5,543,409	+		PP_4875	0.15	-1.3
5,543,409	+		PP_4875	0.15	-2.8
5,543,410	-		PP_4875	0.15	-4.0
5,543,410	-		PP_4875	0.15	+0.6
5,543,410	-		PP_4875	0.15	+0.9
5,543,410	-		PP_4875	0.15	+0.4
5,543,410	-		PP_4875	0.15	+0.6
5,543,410	-		PP_4875	0.15	+0.0
5,543,410	-		PP_4875	0.15	+1.3
5,543,410	-		PP_4875	0.15	+0.1
5,543,628	+		PP_4875	0.40	-1.8
5,543,647	-		PP_4875	0.43	+0.7