Strain Fitness in Pseudomonas putida KT2440 around PP_4529

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
5,143,453	+		PP_4527	0.64	+1.2
5,143,454	-		PP_4527	0.64	+0.2
5,143,469	-		PP_4527	0.66	+1.1
5,143,471	-		PP_4527	0.66	+0.5
5,143,622	+		PP_4527	0.83	-2.7
5,143,623	-		PP_4527	0.83	-0.3
5,143,700	+				-1.0
5,143,739	+				-2.7
5,143,740	-				-2.5
5,143,740	-				+0.8
5,143,783	+				-0.1
5,143,806	+				-0.1
5,143,807	-				+0.9
5,143,812	+				-1.9
5,143,812	+				-0.5
5,143,812	+				-1.5
5,143,813	-				-1.0
5,143,813	-				-1.8
5,143,813	-				-0.4
5,143,813	-				-2.0
5,143,813	-				+0.6
5,143,813	-				+0.4
5,143,813	-				+0.1
5,143,879	+				-0.2
5,143,880	-				-1.6
5,143,880	-				+1.1
5,144,099	+		PP_4528	0.49	+0.1
5,144,271	+		PP_4528	0.88	+0.6
5,144,316	+				-1.4
5,144,389	+		PP_4529	0.11	-3.3
5,144,389	+		PP_4529	0.11	+2.0
5,144,390	-		PP_4529	0.11	+1.0
5,144,543	+		PP_4529	0.71	-0.0
5,144,544	-		PP_4529	0.72	-3.5
5,144,615	+				-0.0
5,144,615	+				+0.4
5,144,615	+				+1.5
5,144,615	+				+0.2
5,144,616	-				+1.3
5,144,616	-				+1.0
5,144,662	+		PP_4530	0.25	+0.9
5,144,662	+		PP_4530	0.25	-1.2
5,144,662	+		PP_4530	0.25	-2.3
5,144,662	+		PP_4530	0.25	-2.1
5,144,662	+		PP_4530	0.25	+1.0
5,144,662	+		PP_4530	0.25	+0.9
5,144,663	-		PP_4530	0.25	+0.2
5,144,663	-		PP_4530	0.25	+0.6
5,144,663	-		PP_4530	0.25	-3.1
5,144,663	-		PP_4530	0.25	+1.2
5,144,688	-		PP_4530	0.34	+0.3
5,144,701	+		PP_4530	0.39	+1.4
5,144,701	+		PP_4530	0.39	+0.9
5,144,701	+		PP_4530	0.39	+1.3
5,144,701	+		PP_4530	0.39	-3.2
5,144,702	-		PP_4530	0.39	+0.3
5,144,702	-		PP_4530	0.39	+1.1
5,144,702	-		PP_4530	0.39	-2.7
5,144,722	+		PP_4530	0.46	+0.0
5,144,723	-		PP_4530	0.47	+1.3
5,144,723	-		PP_4530	0.47	+0.1
5,144,895	+				+0.7
5,144,896	-				-0.5
5,144,896	-				-0.4
5,144,899	+				+1.5
5,144,900	-				-1.0
5,144,900	-				+0.5
5,144,905	-				-0.3
5,144,927	+				-2.5
5,144,938	-				+0.9
5,144,938	-				-0.5
5,144,990	+				-3.7
5,144,991	-				+1.0
5,144,991	-				+0.4
5,145,097	+				-1.8
5,145,106	+				-1.6
5,145,107	-				+1.0
5,145,107	-				-0.2
5,145,201	-		PP_4531	0.42	+0.1
5,145,296	+		PP_4531	0.77	+0.1
5,145,297	-		PP_4531	0.77	-0.4
5,145,297	-		PP_4531	0.77	-3.1
5,145,297	-		PP_4531	0.77	+0.9
5,145,432	+				+0.2
5,145,432	+				-0.6
5,145,432	+				-1.5
5,145,433	-				-0.1
5,145,433	-				-1.1
5,145,514	+				-0.9
5,145,515	-				+1.3