Strain Fitness in Pseudomonas putida KT2440 around PP_4409

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
5,001,398	+				-0.6
5,001,466	+				+1.8
5,001,467	-				+0.6
5,001,467	-				-0.6
5,001,491	+				-4.3
5,001,491	+				+1.2
5,001,491	+				-0.3
5,001,574	+				+0.2
5,001,586	-				+1.8
5,001,612	-				+0.6
5,001,612	-				-3.7
5,001,702	-				+0.6
5,002,100	+				+1.2
5,002,271	+				+0.6
5,002,280	-				-0.1
5,002,432	-		PP_4409	0.15	+1.1
5,002,454	+		PP_4409	0.17	+0.2
5,002,454	+		PP_4409	0.17	+1.6
5,002,719	+		PP_4409	0.35	-2.9
5,002,720	-		PP_4409	0.35	-0.0
5,002,813	+		PP_4409	0.42	+0.7
5,003,128	-		PP_4409	0.64	+1.0
5,003,146	+		PP_4409	0.65	-1.2
5,003,223	-		PP_4409	0.70	+1.1
5,003,352	+		PP_4409	0.79	+0.7
5,003,353	-		PP_4409	0.79	+0.7
5,003,390	-		PP_4409	0.82	-1.9
5,003,394	-		PP_4409	0.82	+1.1
5,003,654	-				+0.2
5,004,034	+		PP_4410	0.12	+0.1
5,004,187	+		PP_4410	0.16	+0.9
5,004,188	-		PP_4410	0.16	+0.5
5,004,470	-		PP_4410	0.25	+0.8
5,004,534	-		PP_4410	0.27	-0.4
5,004,568	+		PP_4410	0.28	-1.2