Strain Fitness in Pseudomonas putida KT2440 around PP_4200

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,744,234	+		PP_4198	0.27	+0.0
4,744,234	+		PP_4198	0.27	+0.1
4,744,235	-		PP_4198	0.27	-3.1
4,744,244	-		PP_4198	0.28	+0.4
4,744,244	-		PP_4198	0.28	-3.6
4,744,245	+		PP_4198	0.29	+0.2
4,744,255	+		PP_4198	0.30	-0.0
4,744,256	-		PP_4198	0.30	-2.8
4,744,256	-		PP_4198	0.30	-1.2
4,744,563	+		PP_4198	0.68	+0.2
4,744,578	+		PP_4198	0.69	-1.5
4,744,578	+		PP_4198	0.69	+0.8
4,744,578	+		PP_4198	0.69	+0.3
4,744,584	+		PP_4198	0.70	-3.3
4,744,584	+		PP_4198	0.70	+1.7
4,744,584	+		PP_4198	0.70	-1.6
4,744,584	+		PP_4198	0.70	+0.8
4,744,585	-		PP_4198	0.70	-0.3
4,744,585	-		PP_4198	0.70	-2.0
4,744,981	-		PP_4199	0.45	+1.4
4,745,159	-				-3.0
4,745,186	+				-1.3
4,745,187	-				+0.7
4,745,187	-				-1.2
4,745,325	+		PP_4200	0.17	+1.7
4,745,326	-		PP_4200	0.17	-2.9
4,745,326	-		PP_4200	0.17	+0.2
4,745,354	+		PP_4200	0.21	+1.8
4,745,354	+		PP_4200	0.21	+0.0
4,745,354	+		PP_4200	0.21	+0.5
4,745,354	+		PP_4200	0.21	+2.1
4,745,389	+		PP_4200	0.25	-1.1
4,745,389	+		PP_4200	0.25	-1.1
4,745,389	+		PP_4200	0.25	-0.3
4,745,389	+		PP_4200	0.25	-0.0
4,745,389	+		PP_4200	0.25	-1.7
4,745,390	-		PP_4200	0.25	-0.8
4,745,390	-		PP_4200	0.25	+0.5
4,745,456	+		PP_4200	0.33	+1.1
4,745,456	+		PP_4200	0.33	-0.3
4,745,456	+		PP_4200	0.33	+1.4
4,745,456	+		PP_4200	0.33	+0.5
4,745,456	+		PP_4200	0.33	+1.1
4,745,457	-		PP_4200	0.33	+1.8
4,745,457	-		PP_4200	0.33	-1.3
4,745,457	-		PP_4200	0.33	+1.8
4,745,545	-		PP_4200	0.44	-0.9
4,745,588	+		PP_4200	0.49	+1.1
4,745,588	+		PP_4200	0.49	-2.1
4,745,651	+		PP_4200	0.57	+2.0
4,745,651	+		PP_4200	0.57	-0.5
4,745,651	+		PP_4200	0.57	+0.2
4,745,681	+		PP_4200	0.60	-0.9
4,745,681	+		PP_4200	0.60	+1.1
4,745,682	-		PP_4200	0.60	+0.7
4,746,025	+				-0.0
4,746,026	-				-0.8
4,746,063	+				-2.4
4,746,063	+				-3.0
4,746,063	+				-0.0
4,746,063	+				+0.7
4,746,063	+				-0.1
4,746,064	-				+1.3
4,746,064	-				+0.2
4,746,065	+				-3.9