Strain Fitness in Pseudomonas putida KT2440 around PP_4074

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,601,168	+				-1.0
4,601,169	-				+0.7
4,601,169	-				+0.8
4,601,260	+				-1.8
4,601,260	+				+0.6
4,601,261	-				+0.6
4,601,352	+		PP_4073	0.15	-0.5
4,601,353	-		PP_4073	0.15	-0.5
4,601,353	-		PP_4073	0.15	-3.8
4,601,877	-				-3.6
4,601,877	-				+1.2
4,601,918	+				-0.6
4,601,919	-				-0.3
4,601,967	+				-0.3
4,602,089	-				-0.7
4,602,113	-				-3.2
4,602,130	+				-0.5
4,602,131	-				-0.7
4,602,134	+				-0.4
4,602,134	+				-2.5
4,602,217	+		PP_4074	0.10	-0.2
4,602,217	+		PP_4074	0.10	-1.6
4,602,217	+		PP_4074	0.10	-1.8
4,602,217	+		PP_4074	0.10	+0.5
4,602,218	-		PP_4074	0.10	-4.4
4,602,251	+		PP_4074	0.17	-0.7
4,602,801	+				+1.0
4,603,097	+				+1.6
4,603,097	+				-1.1
4,603,109	+				+0.1
4,603,113	+				-0.0
4,603,114	-				+0.3
4,603,114	-				+1.9
4,603,125	+				-1.0
4,603,126	-				+0.4
4,603,126	-				-0.4
4,603,209	-				+0.9
4,603,224	+				-0.5
4,603,224	+				+0.9
4,603,224	+				+0.8
4,603,225	-				+2.0
4,603,225	-				-0.0
4,603,228	+				-3.2
4,603,229	-				+0.9
4,603,440	+				+0.3
4,603,476	+				+0.2
4,603,509	+				-3.1
4,603,510	-				+1.2
4,603,510	-				-2.7
4,603,551	-				+0.6
4,603,551	-				-1.9
4,603,638	+				+0.1
4,603,638	+				-1.1