Strain Fitness in Pseudomonas putida KT2440 around PP_4035

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,545,041	+		PP_4034	0.40	-0.8
4,545,222	+		PP_4034	0.55	+1.0
4,545,223	-		PP_4034	0.55	-2.4
4,545,223	-		PP_4034	0.55	+0.4
4,545,354	-		PP_4034	0.65	+1.2
4,545,529	+		PP_4034	0.78	-3.2
4,545,587	+		PP_4034	0.83	-0.6
4,545,587	+		PP_4034	0.83	-1.8
4,545,587	+		PP_4034	0.83	-1.7
4,545,588	-		PP_4034	0.83	-1.4
4,545,828	-				-0.3
4,545,837	-				-1.3
4,545,916	+				-0.0
4,545,916	+				-0.5
4,545,916	+				-0.3
4,545,917	-				-2.1
4,545,955	+				-1.6
4,545,955	+				+0.2
4,545,955	+				+1.1
4,545,955	+				+0.9
4,545,955	+				+0.1
4,545,956	-				-0.2
4,545,962	-				+0.0
4,545,997	-				+0.4
4,545,997	-				+0.5
4,546,070	-		PP_4035	0.14	-1.5
4,546,111	+		PP_4035	0.17	-3.6
4,546,111	+		PP_4035	0.17	-0.1
4,546,112	-		PP_4035	0.17	-1.3
4,546,112	-		PP_4035	0.17	+0.6
4,546,157	-		PP_4035	0.20	-1.1
4,546,257	-		PP_4035	0.27	+0.2
4,546,643	-		PP_4035	0.53	-1.5
4,546,643	-		PP_4035	0.53	+0.9
4,546,643	-		PP_4035	0.53	-1.2
4,546,977	+		PP_4035	0.75	-0.0
4,546,977	+		PP_4035	0.75	-3.6
4,546,977	+		PP_4035	0.75	-2.6
4,546,978	-		PP_4035	0.75	-1.7
4,546,978	-		PP_4035	0.75	+0.9
4,546,978	-		PP_4035	0.75	+1.2
4,546,978	-		PP_4035	0.75	-1.1
4,547,035	+		PP_4035	0.79	-1.0
4,547,036	-		PP_4035	0.79	-1.9
4,547,070	+		PP_4035	0.81	-1.9
4,547,082	+		PP_4035	0.82	-1.4
4,547,083	-		PP_4035	0.82	+1.1
4,547,134	+		PP_4035	0.86	-1.2
4,547,161	+		PP_4035	0.88	-2.9
4,547,161	+		PP_4035	0.88	-0.8
4,547,162	-		PP_4035	0.88	+0.0
4,547,162	-		PP_4035	0.88	+0.5
4,547,162	-				-0.5
4,547,247	+				+0.1
4,547,248	-				-2.6
4,547,248	-				-1.5
4,547,248	-				-3.3
4,547,248	-				-1.9
4,547,248	-				-0.1
4,547,248	-				-0.4
4,547,248	-				+0.7
4,547,260	+				-1.6
4,547,260	+				-1.0
4,547,345	+				+0.5
4,547,346	-				-0.9
4,547,346	-				-3.8
4,547,346	-				-0.3
4,547,426	+				-0.5
4,547,460	+				+0.6
4,547,468	+				+0.3
4,547,582	+				-0.5
4,547,582	+				-0.9
4,547,836	+		PP_4036	0.10	-2.6
4,547,836	+		PP_4036	0.10	+1.7
4,547,836	+		PP_4036	0.10	-0.8
4,547,837	-		PP_4036	0.10	+0.6
4,548,066	+		PP_4036	0.26	-0.5
4,548,067	-		PP_4036	0.26	+1.4
4,548,151	+		PP_4036	0.32	-1.3
4,548,152	-		PP_4036	0.32	-0.8