Strain Fitness in Pseudomonas putida KT2440 around PP_3946

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,448,048	+		PP_3945	0.15	+0.5
4,448,048	+		PP_3945	0.15	+0.9
4,448,049	-		PP_3945	0.15	-2.6
4,448,549	+		PP_3945	0.63	-1.4
4,448,549	+		PP_3945	0.63	+0.2
4,448,549	+		PP_3945	0.63	+0.5
4,448,550	-		PP_3945	0.63	+1.5
4,448,550	-		PP_3945	0.63	-0.8
4,448,550	-		PP_3945	0.63	-1.4
4,448,550	-		PP_3945	0.63	+0.3
4,448,601	+				+0.6
4,448,601	+		PP_3945	0.68	-0.5
4,448,601	+		PP_3945	0.68	-0.4
4,448,601	+		PP_3945	0.68	+1.9
4,448,601	+		PP_3945	0.68	+1.1
4,448,602	-		PP_3945	0.68	-3.3
4,448,602	-		PP_3945	0.68	-0.1
4,448,602	-		PP_3945	0.68	-2.7
4,448,602	-		PP_3945	0.68	+1.4
4,448,636	+		PP_3945	0.71	-2.3
4,448,636	+		PP_3945	0.71	-2.5
4,448,636	+		PP_3945	0.71	-0.8
4,448,636	+		PP_3945	0.71	-0.8
4,448,636	+		PP_3945	0.71	+0.1
4,448,637	-		PP_3945	0.71	-1.1
4,448,637	-		PP_3945	0.71	+0.5
4,448,645	+		PP_3945	0.72	-0.4
4,448,646	-		PP_3945	0.72	+1.0
4,448,664	+		PP_3945	0.74	-2.5
4,448,664	+		PP_3945	0.74	-0.1
4,448,665	-		PP_3945	0.74	-0.3
4,448,665	-		PP_3945	0.74	-2.1
4,448,665	-		PP_3945	0.74	+1.6
4,448,666	+		PP_3945	0.74	-0.7
4,448,667	-		PP_3945	0.74	-3.3
4,448,682	+		PP_3945	0.76	-2.1
4,448,682	+		PP_3945	0.76	+0.3
4,448,682	+		PP_3945	0.76	-3.3
4,448,682	+		PP_3945	0.76	-0.8
4,448,682	+		PP_3945	0.76	-2.7
4,448,683	-		PP_3945	0.76	-0.2
4,448,683	-		PP_3945	0.76	-0.9
4,448,771	+		PP_3945	0.84	-0.6
4,448,772	-		PP_3945	0.84	-0.0
4,448,867	-				-0.5
4,448,867	-				+1.2
4,448,867	-				-3.4
4,448,871	-				-1.1
4,448,943	+				+0.2
4,448,944	-				+1.2
4,448,944	-				-1.2
4,448,945	+				-0.5
4,448,945	+				-1.6
4,448,945	+				-1.1
4,448,946	-				-3.1
4,448,946	-				-1.8
4,448,946	-				+0.4
4,448,946	-				-1.0
4,448,946	-				-1.1
4,448,946	-				-2.0
4,449,008	+				+0.0
4,449,008	+				+1.6
4,449,009	-				-1.2
4,449,009	-				+0.1
4,449,009	-				+1.1
4,449,009	-				-1.6
4,449,150	-		PP_3946	0.30	+1.5
4,449,150	-		PP_3946	0.30	-2.0
4,449,441	+				+1.7
4,449,680	-				-0.8
4,449,680	-				-0.5
4,449,689	+				+0.7
4,449,690	-				-3.3
4,449,701	+				+0.0
4,449,800	+				+0.2
4,449,800	+				-1.4
4,449,801	-				-0.3
4,449,801	-				+0.8
4,449,801	-				-0.9
4,449,801	-				-2.9
4,449,801	-				-1.3
4,449,801	-				+0.8
4,449,801	-				-0.9
4,449,801	-				-0.3
4,449,801	-				-3.6
4,449,851	+				+0.2
4,449,858	+				-1.3
4,449,858	+				-2.9
4,449,858	+				+0.5
4,449,858	+				-0.9
4,449,859	-				-0.0
4,449,859	-				+0.2
4,449,925	+				+1.0
4,449,926	-				+2.3
4,449,926	-				-0.4
4,449,926	-				+0.1
4,449,926	-				-0.3
4,450,073	+		PP_3947	0.31	-0.2
4,450,073	+		PP_3947	0.31	-0.3
4,450,074	-		PP_3947	0.31	+0.3
4,450,074	-		PP_3947	0.31	-2.9
4,450,142	+		PP_3947	0.45	-0.0
4,450,142	+		PP_3947	0.45	+0.3
4,450,143	-		PP_3947	0.46	-1.1
4,450,231	-		PP_3947	0.64	-1.6
4,450,231	-		PP_3947	0.64	+0.9
4,450,231	-		PP_3947	0.64	+0.7