Strain Fitness in Pseudomonas putida KT2440 around PP_3745

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,273,073	+				-1.1
4,273,074	-				-0.7
4,273,102	+				+0.9
4,273,103	-				-0.9
4,273,163	+				+0.6
4,273,163	+				+0.8
4,273,174	+		PP_3744	0.11	-2.2
4,273,174	+		PP_3744	0.11	-0.7
4,273,174	+		PP_3744	0.11	+1.1
4,273,175	-		PP_3744	0.11	+0.0
4,273,175	-		PP_3744	0.11	+1.2
4,273,175	-		PP_3744	0.11	+1.0
4,273,282	-		PP_3744	0.25	-1.4
4,273,343	-		PP_3744	0.33	+0.3
4,273,361	-		PP_3744	0.35	-0.8
4,273,361	-		PP_3744	0.35	-0.5
4,273,479	-		PP_3744	0.50	-2.4
4,273,606	+		PP_3744	0.66	-0.1
4,273,606	+		PP_3744	0.66	+0.4
4,273,884	+				+0.2
4,273,885	+				+1.0
4,273,885	-				+0.2
4,273,917	+				-3.1
4,273,917	+				-2.2
4,274,049	+				-0.5
4,274,050	-				-0.5
4,274,198	-		PP_3745	0.10	+0.6
4,274,376	+		PP_3745	0.22	-1.9
4,274,427	-		PP_3745	0.26	-0.8
4,274,466	+		PP_3745	0.28	-4.1
4,274,466	+		PP_3745	0.28	+0.0
4,274,466	+		PP_3745	0.28	-3.9
4,274,466	+		PP_3745	0.28	-1.9
4,274,467	-		PP_3745	0.28	+0.2
4,274,467	-		PP_3745	0.28	-0.2
4,274,467	-		PP_3745	0.28	+1.0
4,274,467	-		PP_3745	0.28	-0.3
4,274,467	-		PP_3745	0.28	-0.6
4,274,467	-		PP_3745	0.28	-2.3
4,274,470	+		PP_3745	0.28	-2.2
4,274,470	+		PP_3745	0.28	-1.7
4,274,470	+		PP_3745	0.28	-1.2
4,274,471	-		PP_3745	0.28	+0.2
4,274,471	-		PP_3745	0.28	+0.1
4,274,471	-		PP_3745	0.28	-0.4
4,274,473	+		PP_3745	0.29	-0.1
4,274,473	+		PP_3745	0.29	-0.6
4,274,473	+		PP_3745	0.29	+1.5
4,274,473	+		PP_3745	0.29	+0.3
4,274,474	-		PP_3745	0.29	+0.4
4,274,474	-		PP_3745	0.29	-1.1
4,274,557	+		PP_3745	0.34	-1.1
4,274,558	-		PP_3745	0.34	+1.4
4,274,558	-		PP_3745	0.34	+0.2
4,274,598	+		PP_3745	0.37	+0.1
4,274,599	-		PP_3745	0.37	-0.7
4,274,599	-		PP_3745	0.37	-4.7
4,274,753	+		PP_3745	0.47	+0.8
4,275,097	+		PP_3745	0.70	-0.2
4,275,097	+		PP_3745	0.70	+0.2
4,275,098	-		PP_3745	0.70	-0.0
4,275,098	-		PP_3745	0.70	-0.7
4,275,098	-		PP_3745	0.70	-2.0
4,275,098	-		PP_3745	0.70	-1.2
4,275,098	-		PP_3745	0.70	-0.6
4,275,098	-		PP_3745	0.70	+0.5
4,275,098	-		PP_3745	0.70	+0.7
4,275,098	-		PP_3745	0.70	-0.9
4,275,098	-		PP_3745	0.70	-1.5
4,275,132	-		PP_3745	0.73	-1.1
4,275,172	+		PP_3745	0.75	-1.4
4,275,173	-		PP_3745	0.75	-2.2
4,275,608	+				+0.2
4,275,609	-				+0.1
4,275,674	-		PP_3746	0.12	+0.2
4,275,708	+		PP_3746	0.16	-1.0
4,275,709	-		PP_3746	0.16	+0.3
4,275,709	-		PP_3746	0.16	+0.9
4,275,728	-		PP_3746	0.18	-2.5
4,275,905	-		PP_3746	0.34	-0.0
4,276,069	+		PP_3746	0.50	-1.7
4,276,182	+		PP_3746	0.61	-0.1
4,276,183	-		PP_3746	0.61	+0.0
4,276,471	-		PP_3746	0.88	+0.1
4,276,521	+				-0.7