Strain Fitness in Pseudomonas putida KT2440 around PP_3532

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,002,465	+		PP_3530	0.77	-2.5
4,002,466	-		PP_3530	0.78	-1.3
4,002,466	-		PP_3530	0.78	-0.5
4,002,466	-		PP_3530	0.78	-0.1
4,002,590	+				-1.9
4,002,590	+				-1.1
4,002,591	-				-1.1
4,002,591	-				-0.9
4,002,591	-				-3.6
4,002,591	-				-2.6
4,002,594	+				-2.7
4,002,603	+				-1.5
4,002,603	+				-1.9
4,002,603	+				-1.4
4,002,604	-				-1.5
4,002,625	+				+0.4
4,002,625	+				+0.5
4,002,625	+				-2.5
4,002,625	+				-1.0
4,002,626	-				-0.6
4,002,626	-				-3.1
4,002,626	-				-0.3
4,002,626	-				-0.9
4,002,652	-				+0.4
4,002,718	+				+0.3
4,002,843	-		PP_3531	0.17	+1.1
4,002,869	+		PP_3531	0.21	-0.0
4,002,962	+		PP_3531	0.36	-3.5
4,002,962	+		PP_3531	0.36	-3.1
4,003,016	+		PP_3531	0.46	-0.4
4,003,223	+		PP_3531	0.80	-0.2
4,003,223	+		PP_3531	0.80	-0.2
4,003,224	-		PP_3531	0.80	+1.5
4,003,224	-		PP_3531	0.80	-1.6
4,003,289	-				+0.2
4,003,310	-				+0.9
4,003,396	+				-0.7
4,003,396	+				-1.1
4,003,396	+				+0.9
4,003,396	+				-0.9
4,003,396	+				-0.2
4,003,397	-				+0.6
4,003,397	-				+0.2
4,003,397	-				+0.7
4,003,797	-		PP_3532	0.88	+0.6
4,003,847	+				-0.2
4,003,860	+				-2.1
4,003,872	+				-1.8
4,003,872	+				+0.8
4,003,977	-				+0.8
4,004,018	+				-0.5
4,004,018	+				+1.7
4,004,018	+				-0.6
4,004,019	-				-2.3
4,004,019	-				-1.5
4,004,041	+				-0.2
4,004,042	-				+0.4
4,004,230	+		PP_3533	0.19	+0.0
4,004,231	-		PP_3533	0.19	+0.1
4,004,242	+		PP_3533	0.20	+1.1
4,004,242	+		PP_3533	0.20	+0.3
4,004,243	-		PP_3533	0.20	-2.6
4,004,283	+		PP_3533	0.24	-1.4
4,004,284	-		PP_3533	0.24	-0.1
4,004,284	-		PP_3533	0.24	+1.4
4,004,284	-		PP_3533	0.24	+0.9
4,004,303	+				-1.0
4,004,303	+		PP_3533	0.25	-2.3
4,004,563	+		PP_3533	0.50	+0.2
4,004,563	+		PP_3533	0.50	-1.9
4,004,692	-		PP_3533	0.62	-0.3
4,004,779	+		PP_3533	0.71	+1.1
4,004,780	-		PP_3533	0.71	+1.4