Strain Fitness in Pseudomonas putida KT2440 around PP_3363

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,803,776	+				+0.3
3,803,776	+				+0.2
3,803,776	+				+1.2
3,803,777	-				+0.3
3,803,796	-				+0.7
3,803,916	+				+0.9
3,803,916	+				+0.4
3,803,917	-				+2.6
3,803,917	-				-0.1
3,803,917	-				-2.2
3,803,952	+				+0.0
3,803,953	-				-3.4
3,803,988	+				+1.9
3,803,989	-				+1.2
3,804,100	+				+0.3
3,804,148	+		PP_3362	0.20	-0.1
3,804,149	-		PP_3362	0.20	-0.3
3,804,239	-		PP_3362	0.41	+1.0
3,804,254	-		PP_3362	0.44	+0.8
3,804,452	+		PP_3362	0.89	+0.7
3,804,452	+		PP_3362	0.89	+1.4
3,804,452	+		PP_3362	0.89	+0.1
3,804,453	-		PP_3362	0.89	+0.3
3,804,501	+				+0.6
3,804,502	-				-2.9
3,804,502	-				-0.1
3,804,516	+				+0.1
3,804,699	+		PP_3363	0.26	+0.9
3,804,907	+		PP_3363	0.59	-2.7
3,804,907	+		PP_3363	0.59	+0.9
3,804,907	+		PP_3363	0.59	+0.8
3,804,908	-		PP_3363	0.59	+1.8
3,804,908	-		PP_3363	0.59	+0.4
3,804,908	-				-1.0
3,805,166	+				-1.0
3,805,190	-				+1.3
3,805,205	-				+0.5
3,805,235	-				+2.1
3,805,243	-				+0.5
3,805,326	-				+0.5
3,805,391	+				-0.0
3,805,391	+				+1.9
3,805,391	+				+0.6
3,805,391	+				-1.0
3,805,391	+				+0.1
3,805,392	-				-1.0
3,805,404	+				-0.5
3,805,404	+				+1.1
3,805,539	+				-0.2
3,805,539	+				+1.5
3,805,539	+				-0.1
3,805,540	-				+5.9
3,805,550	-				+0.8
3,805,597	+				+1.9
3,805,598	-				+0.7
3,805,598	-				+0.5
3,805,598	-				+0.7
3,805,703	+		PP_3364	0.12	-3.0
3,805,703	+		PP_3364	0.12	+0.5
3,805,703	+		PP_3364	0.12	-2.4
3,805,703	+		PP_3364	0.12	-1.9
3,805,877	+		PP_3364	0.19	+0.5
3,805,878	-		PP_3364	0.19	+0.0
3,805,878	-		PP_3364	0.19	-3.4
3,805,884	+		PP_3364	0.20	+0.3
3,805,884	+		PP_3364	0.20	+0.3
3,805,884	+		PP_3364	0.20	+0.1
3,805,885	-		PP_3364	0.20	+1.7
3,805,885	-		PP_3364	0.20	-1.9
3,805,956	-		PP_3364	0.22	+0.6
3,805,998	-		PP_3364	0.24	-0.4
3,806,041	+		PP_3364	0.26	-0.0
3,806,041	+		PP_3364	0.26	+0.3
3,806,042	-		PP_3364	0.26	-2.6
3,806,096	+		PP_3364	0.28	+0.7
3,806,097	-		PP_3364	0.28	-0.7
3,806,097	-		PP_3364	0.28	+0.6
3,806,135	+		PP_3364	0.29	-4.6
3,806,135	+		PP_3364	0.29	-0.1
3,806,136	-		PP_3364	0.30	-0.7