Strain Fitness in Pseudomonas putida KT2440 around PP_3264

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,697,579	-				+0.8
3,697,579	-				-0.2
3,697,611	+				-3.1
3,697,611	+				-1.8
3,697,614	+		PP_3263	0.10	+2.4
3,697,614	+		PP_3263	0.10	-4.2
3,697,615	-		PP_3263	0.10	-2.6
3,697,615	-		PP_3263	0.10	+0.2
3,697,777	-		PP_3263	0.27	+3.3
3,697,777	-		PP_3263	0.27	+1.0
3,697,941	+		PP_3263	0.44	+0.1
3,697,991	-		PP_3263	0.50	+0.8
3,698,039	+		PP_3263	0.55	-1.7
3,698,039	+		PP_3263	0.55	-1.9
3,698,039	+				-1.0
3,698,059	+		PP_3263	0.57	+1.5
3,698,059	+		PP_3263	0.57	-0.7
3,698,059	+		PP_3263	0.57	-1.1
3,698,060	-		PP_3263	0.57	+0.2
3,698,060	-		PP_3263	0.57	-0.3
3,698,060	-		PP_3263	0.57	-2.2
3,698,060	-		PP_3263	0.57	-0.9
3,698,061	+		PP_3263	0.57	-0.4
3,698,062	-		PP_3263	0.57	+0.4
3,698,062	-		PP_3263	0.57	-1.1
3,698,196	+		PP_3263	0.71	-3.9
3,698,219	+		PP_3263	0.74	+1.9
3,698,234	+		PP_3263	0.75	-0.4
3,698,240	-		PP_3263	0.76	-0.7
3,698,240	-		PP_3263	0.76	+0.2
3,698,271	+		PP_3263	0.79	-1.2
3,698,271	+		PP_3263	0.79	-0.8
3,698,289	+		PP_3263	0.81	-1.5
3,698,289	+		PP_3263	0.81	-0.3
3,698,290	-		PP_3263	0.81	-3.7
3,698,290	-		PP_3263	0.81	-0.3
3,698,337	+		PP_3263	0.86	+0.3
3,698,338	-		PP_3263	0.86	+0.4
3,698,392	-				-2.9
3,698,837	+		PP_3264	0.31	+1.1
3,698,838	-		PP_3264	0.31	-1.4
3,698,870	+		PP_3264	0.33	+1.4
3,698,871	-				+0.6
3,698,871	-		PP_3264	0.33	+1.4
3,698,876	+		PP_3264	0.34	+0.8
3,698,877	-		PP_3264	0.34	+1.2
3,699,053	+		PP_3264	0.48	-0.2
3,699,053	+		PP_3264	0.48	-1.2
3,699,054	-		PP_3264	0.49	-1.0
3,699,054	-		PP_3264	0.49	-1.1
3,699,234	-		PP_3264	0.64	+0.2
3,699,266	-		PP_3264	0.66	+1.3
3,699,282	-		PP_3264	0.67	+1.6
3,699,569	-				-0.3
3,699,569	-				+0.3
3,699,614	+				-1.1
3,699,615	-				+0.5
3,699,615	-				-0.7
3,699,615	-				-1.5
3,699,615	-				+0.3
3,699,696	+				-1.5
3,699,697	-				-0.3
3,699,725	-				+0.7
3,699,769	+		PP_3265	0.13	-3.5
3,699,770	-		PP_3265	0.13	-0.5
3,699,997	-		PP_3265	0.42	-0.0
3,700,163	-		PP_3265	0.64	-2.5
3,700,201	+		PP_3265	0.69	+0.3
3,700,525	-				-0.6
3,700,564	-		PP_3266	0.12	-1.6
3,700,564	-		PP_3266	0.12	-0.0
3,700,651	+		PP_3266	0.20	-0.8