Strain Fitness in Pseudomonas putida KT2440 around PP_3038

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,420,881	-		PP_5554	0.89	-0.7
3,420,885	-				-0.2
3,420,902	-				-0.4
3,420,902	-				-0.8
3,420,902	-				-0.4
3,420,902	-				-2.2
3,420,902	-				+0.1
3,420,933	+				-0.8
3,420,977	-				+0.5
3,421,054	+		PP_3036	0.45	+0.4
3,421,055	-		PP_3036	0.46	-1.6
3,421,055	-		PP_3036	0.46	+0.2
3,421,055	-		PP_3036	0.46	+1.4
3,421,055	-		PP_3036	0.46	-1.4
3,421,062	+		PP_3036	0.49	+0.2
3,421,063	-		PP_3036	0.50	+0.5
3,421,194	-		PP_5555	0.13	-0.9
3,421,211	+		PP_5555	0.17	-0.3
3,421,211	+		PP_5555	0.17	-0.0
3,421,300	+		PP_5555	0.34	-3.0
3,421,300	+		PP_5555	0.34	-0.3
3,421,301	-		PP_5555	0.34	-0.4
3,421,301	-		PP_5555	0.34	+1.0
3,421,301	-		PP_5555	0.34	+0.7
3,421,415	+		PP_5555	0.56	+1.2
3,421,415	+		PP_5555	0.56	-0.9
3,421,415	+		PP_5555	0.56	-3.5
3,421,415	+		PP_5555	0.56	-0.3
3,421,416	-		PP_5555	0.56	-3.3
3,421,416	-		PP_5555	0.56	-0.3
3,421,417	+		PP_5555	0.56	-0.1
3,421,417	+		PP_5555	0.56	-1.1
3,421,417	+		PP_5555	0.56	+0.4
3,421,417	+		PP_5555	0.56	+0.6
3,421,418	-		PP_5555	0.57	+1.2
3,421,418	-		PP_5555	0.57	+0.8
3,421,418	-		PP_5555	0.57	+1.8
3,421,427	-		PP_5555	0.58	-3.6
3,421,502	-		PP_5555	0.73	-1.0
3,421,589	+		PP_5555	0.90	-0.0
3,421,589	+		PP_5555	0.90	-0.3
3,421,590	-		PP_5555	0.90	+1.3
3,421,604	+				-0.3
3,421,604	+				+0.2
3,421,605	-				-1.6
3,421,644	-				-1.7
3,421,687	+		PP_3037	0.24	-0.0
3,421,687	+		PP_3037	0.24	+0.7
3,421,688	-		PP_3037	0.24	-2.0
3,421,843	-				+2.8
3,421,851	+				-3.2
3,421,851	+				-0.4
3,421,852	-				-3.0
3,421,852	-				+0.4
3,421,877	-				+0.9
3,421,966	+				+1.2
3,421,967	-				-0.3
3,421,967	-				+0.8
3,421,967	-				-0.2
3,422,196	+		PP_3038	0.16	-0.1
3,422,221	+				-1.9
3,422,222	-		PP_3038	0.17	-1.1
3,422,375	-		PP_3038	0.24	+0.8
3,422,375	-		PP_3038	0.24	+0.9
3,422,464	+		PP_3038	0.28	-0.8
3,422,553	+		PP_3038	0.32	+0.8
3,422,553	+		PP_3038	0.32	-2.9
3,422,554	-		PP_3038	0.32	-0.5
3,422,554	-		PP_3038	0.32	+0.0
3,422,554	-		PP_3038	0.32	-0.5
3,422,554	-		PP_3038	0.32	+0.4
3,422,554	-		PP_3038	0.32	+0.9
3,422,588	+		PP_3038	0.34	+1.9
3,422,589	-		PP_3038	0.34	-3.3
3,422,690	+		PP_3038	0.38	+0.8
3,422,691	-		PP_3038	0.38	+0.7
3,422,725	-		PP_3038	0.40	+1.0
3,422,927	-		PP_3038	0.49	-3.1
3,422,971	+		PP_3038	0.51	+1.4
3,423,121	+		PP_3038	0.58	+0.5
3,423,122	-		PP_3038	0.58	+0.7
3,423,202	+		PP_3038	0.61	-0.9
3,423,203	-		PP_3038	0.62	-0.1
3,423,203	-		PP_3038	0.62	-0.2
3,423,267	+		PP_3038	0.64	+0.2
3,423,268	-		PP_3038	0.64	-0.7
3,423,358	-		PP_3038	0.69	+1.5
3,423,358	-		PP_3038	0.69	+0.7
3,423,405	+		PP_3038	0.71	+1.5
3,423,405	+		PP_3038	0.71	+0.6
3,423,406	-		PP_3038	0.71	-1.4
3,423,486	+		PP_3038	0.74	-0.5
3,423,486	+		PP_3038	0.74	+0.2
3,423,486	+		PP_3038	0.74	+2.4
3,423,487	-		PP_3038	0.74	+0.3
3,423,496	+		PP_3038	0.75	-0.2
3,423,509	-		PP_3038	0.75	+0.1
3,423,574	+		PP_3038	0.78	+0.5
3,423,575	-		PP_3038	0.78	+0.6
3,423,575	-		PP_3038	0.78	+0.3
3,423,575	-		PP_3038	0.78	+0.9
3,423,575	-		PP_3038	0.78	+1.1
3,423,579	+		PP_3038	0.79	+1.3
3,423,579	+		PP_3038	0.79	-0.3
3,423,605	-		PP_3038	0.80	+1.5
3,423,767	+		PP_3038	0.87	+1.0
3,423,767	+		PP_3038	0.87	-0.7
3,423,966	+				-0.1
3,423,967	-				-3.2
3,423,982	+				-1.1
3,424,063	+				-1.3
3,424,063	+				+0.7
3,424,063	+				+0.3
3,424,063	+				-1.6
3,424,063	+				-1.8
3,424,063	+				+0.3
3,424,063	+				+1.1
3,424,064	-				+0.2
3,424,064	-				-0.2
3,424,064	-				+1.7
3,424,137	-		PP_3039	0.24	-0.5
3,424,137	-		PP_3039	0.24	-1.7
3,424,137	-		PP_3039	0.24	+0.2
3,424,205	-		PP_3039	0.43	-0.6
3,424,205	-		PP_3039	0.43	-0.8
3,424,205	-		PP_3039	0.43	-2.4
3,424,205	-		PP_3039	0.43	+0.6
3,424,205	-		PP_3039	0.43	+0.4
3,424,241	+		PP_3039	0.53	-3.8
3,424,241	+		PP_3039	0.53	+1.1
3,424,242	-		PP_3039	0.53	+0.2
3,424,284	+		PP_3039	0.64	-1.0
3,424,285	-		PP_3039	0.65	-2.4
3,424,285	-		PP_3039	0.65	-1.8
3,424,318	-		PP_3039	0.74	+0.6
3,424,334	+				+1.2
3,424,343	+		PP_3039	0.81	-0.4
3,424,344	-		PP_3039	0.81	-1.3
3,424,344	-		PP_3039	0.81	+0.3
3,424,347	+		PP_3039	0.82	-1.7
3,424,347	+		PP_3039	0.82	-1.2
3,424,347	+		PP_3039	0.82	-1.2
3,424,347	+		PP_3039	0.82	-3.4
3,424,348	-		PP_3039	0.82	+0.1
3,424,350	+		PP_3039	0.83	-0.3
3,424,350	+		PP_3039	0.83	-0.9
3,424,350	+		PP_3039	0.83	-0.7
3,424,351	-		PP_3039	0.83	+0.6
3,424,351	-		PP_3039	0.83	-1.8
3,424,360	+		PP_3039	0.85	+1.1
3,424,361	-		PP_3039	0.86	-0.1
3,424,379	+				-1.4
3,424,431	-				+1.7
3,424,474	-				-2.8
3,424,518	+				-1.2
3,424,538	+				+1.2
3,424,539	-				+1.5
3,424,539	-				-0.9
3,424,622	+				+0.5
3,424,647	+				-0.4
3,424,691	+				-0.8
3,424,692	-				-0.4
3,424,715	+				+0.6
3,424,716	-				+0.4
3,424,716	-				-0.3
3,424,730	+				+0.3
3,424,731	-				+0.2
3,424,731	-				-0.9
3,424,767	+				+1.0
3,424,774	+				-0.1
3,424,775	-				+0.4
3,424,790	+				-0.8
3,424,791	-				-0.2
3,424,823	+				+0.2
3,424,946	+				+0.7
3,424,946	+				-0.8
3,424,946	+				-4.1
3,424,946	+				-3.4
3,424,947	-				+1.0