Strain Fitness in Pseudomonas putida KT2440 around PP_2959

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,361,841	+		PP_2957	0.44	+1.1
3,361,841	+		PP_2957	0.44	-3.2
3,361,844	+		PP_2957	0.44	+1.6
3,361,845	-		PP_2957	0.44	-0.3
3,362,113	-		PP_2957	0.69	-0.7
3,362,237	-		PP_2957	0.80	-0.1
3,362,309	+		PP_2957	0.87	+1.0
3,362,310	-		PP_2957	0.87	+1.0
3,362,377	-				+0.4
3,362,474	+				-0.2
3,362,475	-				+0.8
3,362,475	-				-1.0
3,362,478	+				+0.2
3,362,479	-				+1.2
3,362,479	-				+0.5
3,362,506	+				-1.3
3,362,506	+				+2.0
3,362,506	+				-0.5
3,362,507	-				-3.7
3,362,507	-				+0.7
3,362,507	-				-1.4
3,362,634	+		PP_2958	0.34	-2.3
3,362,634	+		PP_2958	0.34	+0.6
3,362,634	+		PP_2958	0.34	+0.6
3,362,635	-		PP_2958	0.35	-1.0
3,362,761	+		PP_2958	0.84	+0.2
3,362,780	+				-1.5
3,362,780	+				+1.4
3,362,781	-				+1.4
3,362,781	-				+0.0
3,362,781	-				-0.1
3,362,782	+				+0.9
3,362,782	+				+0.7
3,362,782	+				+0.3
3,362,782	+				-0.6
3,362,782	+				-0.5
3,362,782	+				-1.0
3,362,783	-				-0.3
3,362,783	-				+1.1
3,362,783	-				-3.7
3,362,783	-				-0.5
3,362,783	-				-0.6
3,362,783	-				-0.2
3,362,786	+				-0.9
3,362,786	+				-0.8
3,362,786	+				+0.3
3,362,787	-				-1.4
3,362,787	-				-0.5
3,362,808	+				+1.2
3,362,817	-				-0.9
3,362,867	+		PP_2959	0.10	+1.2
3,362,868	-		PP_2959	0.10	-0.2
3,362,920	-		PP_2959	0.20	+0.6
3,362,925	+		PP_2959	0.21	-0.1
3,362,926	-		PP_2959	0.21	-0.5
3,363,168	+		PP_2959	0.68	+0.7
3,363,168	+		PP_2959	0.68	+2.3
3,363,169	-		PP_2959	0.68	+0.7
3,363,322	-				+1.1
3,363,324	+				+0.2
3,363,325	-				+2.5
3,363,348	-				-0.1
3,363,369	+				-1.6
3,363,387	+				+0.3
3,363,387	+				-0.1
3,363,387	+				+1.6
3,363,387	+				+0.5
3,363,387	+				+0.1
3,363,387	+				+1.0
3,363,388	-				+1.4
3,363,388	-				+0.6
3,363,388	-				-2.4
3,363,390	+				+0.7
3,363,390	+				+0.9
3,363,391	-				-0.3
3,363,391	-				-1.2
3,363,431	+				+0.7
3,363,431	+				-0.2
3,363,432	-				-4.3
3,363,432	-				+1.8
3,363,432	-				-1.3
3,363,482	+				-0.3
3,363,482	+				-1.2
3,363,482	+				+2.3
3,363,483	-				+0.7
3,363,486	+				+0.1
3,363,487	-				-2.0
3,363,487	-				+0.9
3,363,507	+				+3.1
3,363,710	+		PP_2960	0.30	-2.2
3,363,711	-		PP_2960	0.30	-0.1
3,364,101	+		PP_2960	0.78	+0.3
3,364,101	+		PP_2960	0.78	-0.9
3,364,101	+		PP_2960	0.78	-1.3
3,364,102	-		PP_2960	0.78	+0.9