Strain Fitness in Pseudomonas putida KT2440 around PP_2871

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,272,443	-		PP_2870	0.18	+0.6
3,272,443	-		PP_2870	0.18	+0.7
3,272,443	-		PP_2870	0.18	+0.4
3,272,554	-		PP_2870	0.28	-0.1
3,272,554	-		PP_2870	0.28	-1.2
3,272,658	+		PP_2870	0.38	-1.3
3,272,659	-		PP_2870	0.38	-0.5
3,272,757	+		PP_2870	0.48	-0.8
3,272,757	+		PP_2870	0.48	+0.6
3,272,806	+		PP_2870	0.52	-0.7
3,272,806	+		PP_2870	0.52	+2.2
3,272,807	-		PP_2870	0.52	-0.6
3,272,807	-		PP_2870	0.52	-0.1
3,272,807	-		PP_2870	0.52	+0.8
3,272,807	-		PP_2870	0.52	-2.9
3,272,807	-		PP_2870	0.52	-1.0
3,272,807	-		PP_2870	0.52	-0.5
3,272,816	-		PP_2870	0.53	+0.2
3,272,949	+		PP_2870	0.66	+1.4
3,272,950	-		PP_2870	0.66	-0.1
3,273,001	+		PP_2870	0.71	-1.8
3,273,002	-		PP_2870	0.71	-0.3
3,273,018	+		PP_2870	0.73	+0.5
3,273,019	-		PP_2870	0.73	-3.6
3,273,019	-		PP_2870	0.73	-2.9
3,273,087	+		PP_2870	0.79	-0.1
3,273,088	-		PP_2870	0.79	-1.2
3,273,117	+		PP_2870	0.82	-0.5
3,273,131	-		PP_2870	0.84	+1.5
3,273,136	-		PP_2870	0.84	-0.1
3,273,149	+		PP_2870	0.85	-0.9
3,273,300	+				-0.1
3,273,301	-				-1.9
3,273,301	-				-2.0
3,273,342	-				-3.2
3,273,342	-				-0.3
3,273,342	-				+0.3
3,273,342	-				-0.9
3,273,417	+		PP_2871	0.12	-1.2
3,273,418	-		PP_2871	0.12	-3.6
3,273,418	-		PP_2871	0.12	+0.8
3,273,418	-		PP_2871	0.12	+0.6
3,273,418	-		PP_2871	0.12	+0.1
3,273,719	-		PP_2871	0.52	-0.8
3,273,862	+		PP_2871	0.71	-3.9
3,273,862	+		PP_2871	0.71	-0.6
3,273,862	+		PP_2871	0.71	+0.2
3,273,862	+		PP_2871	0.71	+0.1
3,273,862	+		PP_2871	0.71	-0.3
3,273,863	-		PP_2871	0.71	-0.6
3,273,863	-		PP_2871	0.71	-1.0
3,273,863	-		PP_2871	0.71	-0.6
3,273,865	+		PP_2871	0.71	+1.1
3,273,865	+		PP_2871	0.71	-1.0
3,273,866	-		PP_2871	0.72	-1.7
3,273,866	-		PP_2871	0.72	-0.8
3,273,866	-		PP_2871	0.72	-1.9
3,273,920	+		PP_2871	0.79	+1.2
3,273,920	+		PP_2871	0.79	-0.2
3,273,920	+		PP_2871	0.79	+0.3
3,273,921	-		PP_2871	0.79	-0.3
3,273,921	-		PP_2871	0.79	-2.8
3,274,069	+				+0.4
3,274,105	+				+0.2
3,274,106	-				-0.1
3,274,106	-				-0.3
3,274,146	-				-0.1
3,274,483	+		PP_2872	0.27	+0.9
3,274,483	+		PP_2872	0.27	-0.6
3,274,483	+		PP_2872	0.27	-2.8
3,274,483	+		PP_2872	0.27	+1.2
3,274,483	+		PP_2872	0.27	+0.2
3,274,484	-		PP_2872	0.27	+1.5
3,274,484	-		PP_2872	0.27	+0.4
3,274,484	-		PP_2872	0.27	-1.5
3,274,720	-		PP_2872	0.54	+1.0
3,274,848	+		PP_2872	0.68	-1.8
3,274,848	+		PP_2872	0.68	+0.1
3,274,849	-		PP_2872	0.68	-0.7
3,274,849	-		PP_2872	0.68	-1.5
3,274,879	+		PP_2872	0.72	+0.6
3,274,879	+		PP_2872	0.72	-1.1
3,274,880	-		PP_2872	0.72	+1.2
3,274,880	-		PP_2872	0.72	-1.2