Strain Fitness in Pseudomonas putida KT2440 around PP_2861

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,261,968	+		PP_2859	0.72	+0.0
3,261,969	-		PP_2859	0.72	-3.2
3,262,011	-		PP_2859	0.80	-0.4
3,262,033	+		PP_2859	0.84	-0.4
3,262,094	-				+0.2
3,262,131	+				+0.1
3,262,132	-				-0.7
3,262,232	-		PP_2860	0.19	-1.0
3,262,244	-		PP_2860	0.22	+0.7
3,262,244	-		PP_2860	0.22	-0.9
3,262,244	-		PP_2860	0.22	-0.2
3,262,244	-		PP_2860	0.22	-1.5
3,262,244	-				-1.3
3,262,244	-		PP_2860	0.22	-2.5
3,262,557	+		PP_2860	0.77	-2.6
3,262,557	+		PP_2860	0.77	-0.4
3,262,558	-		PP_2860	0.77	-1.4
3,262,558	-		PP_2860	0.77	-0.7
3,262,564	+		PP_2860	0.78	-0.7
3,262,564	+		PP_2860	0.78	-0.2
3,262,579	+				-1.7
3,262,579	+		PP_2860	0.81	-0.4
3,262,579	+		PP_2860	0.81	+0.8
3,262,580	-		PP_2860	0.81	-3.8
3,262,580	-		PP_2860	0.81	+0.9
3,262,580	-		PP_2860	0.81	-0.8
3,262,580	-		PP_2860	0.81	-0.6
3,262,750	+				-0.1
3,262,750	+				-0.1
3,262,773	-				+0.7
3,262,773	-				+1.7
3,262,773	-				-0.2
3,262,907	+				+1.9
3,262,908	-				-1.2
3,263,204	-		PP_2861	0.18	-0.6
3,263,204	-		PP_2861	0.18	+0.3
3,263,204	-		PP_2861	0.18	-0.8
3,263,254	-		PP_2861	0.21	-0.3
3,263,254	-		PP_2861	0.21	-2.8
3,263,254	-		PP_2861	0.21	-0.3
3,263,281	-		PP_2861	0.23	-0.8
3,263,520	+		PP_2861	0.37	-4.0
3,263,610	-		PP_2861	0.43	-0.5
3,264,001	+		PP_2861	0.67	-3.3
3,264,001	+		PP_2861	0.67	-0.4
3,264,002	-		PP_2861	0.67	-3.0
3,264,002	-		PP_2861	0.67	+0.5
3,264,014	+		PP_2861	0.67	-2.4
3,264,015	-		PP_2861	0.67	+0.7
3,264,015	-		PP_2861	0.67	-3.3
3,264,015	-		PP_2861	0.67	+0.6
3,264,062	+		PP_2861	0.70	+0.7
3,264,063	-		PP_2861	0.70	-1.8
3,264,063	-		PP_2861	0.70	-0.6
3,264,110	+		PP_2861	0.73	-1.5
3,264,111	-		PP_2861	0.73	+0.1
3,264,285	-		PP_2861	0.84	-0.9
3,264,301	+		PP_2861	0.85	-1.2
3,264,302	-		PP_2861	0.85	-0.7
3,264,365	+		PP_2861	0.89	-1.4
3,264,365	+		PP_2861	0.89	+0.8
3,264,366	-		PP_2861	0.89	-0.5
3,264,368	+		PP_2861	0.89	-2.6
3,264,368	+		PP_2861	0.89	+1.0
3,264,369	-		PP_2861	0.89	+0.5
3,264,429	-				-0.1
3,264,619	-				+0.7
3,264,632	+				-3.1
3,264,633	-				+0.1
3,264,633	-				+0.1
3,264,643	+				-0.6
3,264,662	+				-0.8
3,264,718	-				+0.6
3,264,782	-				+0.8
3,264,939	+		PP_2862	0.11	+0.6
3,264,940	-		PP_2862	0.12	-0.2
3,265,133	+		PP_2862	0.35	+1.2
3,265,133	+		PP_2862	0.35	-0.3
3,265,158	+		PP_2862	0.38	-0.3
3,265,158	+		PP_2862	0.38	+0.1
3,265,168	+		PP_2862	0.39	+1.4
3,265,169	-		PP_2862	0.39	+1.6
3,265,450	+		PP_2862	0.73	+1.5
3,265,450	+		PP_2862	0.73	-0.7
3,265,451	-		PP_2862	0.73	+0.4
3,265,451	-		PP_2862	0.73	-0.3
3,265,459	+		PP_2862	0.74	+0.8
3,265,465	+		PP_2862	0.74	+0.9