Strain Fitness in Pseudomonas putida KT2440 around PP_2785

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
3,171,661	+				-2.2
3,171,661	+				-2.3
3,171,682	+				+0.5
3,171,682	+				-0.0
3,171,683	-				-3.2
3,171,739	+				+0.3
3,171,739	+				+4.1
3,172,074	+		PP_2784	0.45	-4.1
3,172,074	+		PP_2784	0.45	-1.7
3,172,075	-		PP_2784	0.45	-0.2
3,172,173	+		PP_2784	0.58	+0.6
3,172,492	-				-1.5
3,172,492	-				-0.9
3,172,658	+		PP_2785	0.13	+1.9
3,172,700	+		PP_2785	0.16	+0.2
3,172,754	+		PP_2785	0.20	+0.8
3,172,754	+		PP_2785	0.20	+0.8
3,172,754	+		PP_2785	0.20	+1.0
3,172,884	+		PP_2785	0.30	-1.4
3,172,884	+		PP_2785	0.30	+0.6
3,173,654	+				+1.9
3,173,769	-				-0.0
3,174,025	+		PP_2786	0.23	-1.6
3,174,026	-		PP_2786	0.23	+0.8
3,174,067	+		PP_2786	0.28	-0.0
3,174,068	-		PP_2786	0.28	-0.4
3,174,158	-		PP_2786	0.39	-0.1
3,174,229	+		PP_2786	0.48	-0.1
3,174,235	+		PP_2786	0.48	+0.0
3,174,269	-		PP_2786	0.52	+3.3
3,174,269	-		PP_2786	0.52	-1.7
3,174,316	+		PP_2786	0.58	+0.5
3,174,434	+		PP_2786	0.72	-2.8
3,174,435	-		PP_2786	0.72	+1.1
3,174,501	+		PP_2786	0.80	+0.3
3,174,501	+		PP_2786	0.80	+0.9
3,174,501	+		PP_2786	0.80	+1.0
3,174,568	+		PP_2786	0.88	-0.6
3,174,568	+		PP_2786	0.88	+0.4
3,174,647	-				-0.2
3,174,710	-				-0.0
3,174,710	-				+1.2
3,174,772	+				+0.7