Strain Fitness in Pseudomonas putida KT2440 around PP_2612

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,984,480	+		PP_2610	0.87	+0.6
2,984,481	-		PP_2610	0.87	-0.8
2,984,481	-		PP_2610	0.87	+0.8
2,984,481	-		PP_2610	0.87	-1.7
2,984,481	-		PP_2610	0.87	+0.3
2,984,481	-		PP_2610	0.87	+0.9
2,984,493	+				+1.6
2,984,499	+				+1.4
2,984,499	+				-3.1
2,984,500	-				+0.3
2,984,955	+		PP_2611	0.50	-0.7
2,984,955	+		PP_2611	0.50	+1.9
2,984,955	+		PP_2611	0.50	+1.0
2,985,053	-		PP_2611	0.61	+0.6
2,985,055	-		PP_2611	0.61	-0.5
2,985,230	+		PP_2611	0.81	-1.3
2,985,311	+		PP_2611	0.90	+1.3
2,985,469	+				-0.8
2,985,470	-				+1.3
2,985,484	-				-3.2
2,985,507	-				-3.1
2,985,531	+				-0.4
2,985,548	+				-0.4
2,985,606	+				-1.3
2,985,657	-				+0.3
2,985,657	-				-0.4
2,985,660	+				-2.9
2,985,683	+				+0.8
2,985,684	-				+1.6
2,985,684	-				+0.6
2,985,696	-				+1.8
2,985,738	+		PP_2612	0.11	-1.1
2,985,740	+		PP_2612	0.11	+0.2
2,985,785	-		PP_2612	0.13	+0.9
2,985,888	+		PP_2612	0.16	+0.3
2,985,900	+		PP_2612	0.16	-1.4
2,985,955	-		PP_2612	0.18	-3.7
2,986,120	-		PP_2612	0.24	-2.6
2,986,128	-		PP_2612	0.24	-3.6
2,986,152	+		PP_2612	0.25	+0.9
2,986,260	-		PP_2612	0.28	-2.6
2,986,260	-		PP_2612	0.28	+0.1
2,986,827	-		PP_2612	0.47	-2.3
2,987,155	+		PP_2612	0.58	-0.5
2,987,155	+		PP_2612	0.58	-0.8
2,988,392	+				-1.2
2,988,596	-		PP_2613	0.22	-1.0
2,988,596	-		PP_2613	0.22	-0.9
2,988,596	-		PP_2613	0.22	+0.4
2,988,602	-		PP_2613	0.22	+1.3
2,988,607	+		PP_2613	0.23	-0.6
2,988,607	+		PP_2613	0.23	-0.4
2,988,607	+		PP_2613	0.23	-1.1
2,988,607	+		PP_2613	0.23	-2.5
2,988,607	+		PP_2613	0.23	-3.2
2,988,608	-				+0.9
2,988,608	-		PP_2613	0.23	-0.3
2,988,621	+		PP_2613	0.24	+0.8
2,988,622	-		PP_2613	0.24	-0.5
2,988,622	-		PP_2613	0.24	-3.6
2,989,153	+		PP_2613	0.80	+0.8
2,989,153	+		PP_2613	0.80	-0.1
2,989,154	-		PP_2613	0.80	-0.8
2,989,155	+		PP_2613	0.80	-0.7
2,989,155	+		PP_2613	0.80	-0.7
2,989,178	+		PP_2613	0.83	+0.4
2,989,179	-				+1.6