Strain Fitness in Pseudomonas putida KT2440 around PP_2462

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,807,164	+		PP_2460	0.55	-0.8
2,807,218	+		PP_2460	0.61	+1.2
2,807,329	+		PP_2460	0.72	-1.6
2,807,329	+		PP_2460	0.72	-0.3
2,807,329	+		PP_2460	0.72	+0.2
2,807,329	+		PP_2460	0.72	+1.2
2,807,330	-		PP_2460	0.73	+0.3
2,807,330	-		PP_2460	0.73	+0.7
2,807,353	+		PP_2460	0.75	-1.8
2,807,353	+		PP_2460	0.75	+0.7
2,807,354	-		PP_2460	0.75	+0.1
2,807,354	-		PP_2460	0.75	-0.4
2,807,360	+		PP_2460	0.76	-1.3
2,807,360	+		PP_2460	0.76	-0.5
2,807,361	-		PP_2460	0.76	-1.4
2,807,399	-		PP_2460	0.80	-3.3
2,807,405	+		PP_2460	0.80	+0.9
2,807,405	+		PP_2460	0.80	-0.7
2,807,610	+		PP_2461	0.20	-0.0
2,807,901	+				-2.7
2,807,908	-				+0.2
2,807,921	+				-1.0
2,807,921	+				-3.4
2,807,922	-				-0.6
2,807,922	-				+1.3
2,807,922	-				-1.2
2,807,922	-				-0.5
2,808,073	-		PP_2462	0.19	+0.2
2,808,073	-		PP_2462	0.19	+1.3
2,808,431	+				-3.9
2,808,431	+				-0.2
2,808,431	+				-1.1
2,808,431	+				+1.0
2,808,432	-				+0.6
2,808,480	+				+0.4
2,808,567	+				+1.3
2,808,567	+				-0.4
2,808,568	-				-1.0
2,808,693	-		PP_2463	0.55	-1.6
2,808,808	+				-0.6
2,808,809	-				+0.5
2,808,866	+				+1.0
2,808,880	+				+2.5
2,808,880	+				+0.7
2,808,890	+				-1.8
2,808,891	-				+0.7
2,808,944	-				+0.7
2,809,155	+		PP_5525	0.67	+0.3
2,809,156	-		PP_5525	0.67	-1.2
2,809,156	-		PP_5525	0.67	-0.9
2,809,156	-		PP_5525	0.67	-2.1
2,809,156	-		PP_5525	0.67	-0.6
2,809,156	-		PP_5525	0.67	-0.0
2,809,263	+				+0.5
2,809,264	-				-1.0
2,809,292	+				-2.9
2,809,292	+				+1.1
2,809,293	-				-0.0
2,809,332	-				+0.0
2,809,332	-				+0.6