Strain Fitness in Pseudomonas putida KT2440 around PP_2382

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,721,055	-				-0.6
2,721,145	-				+1.0
2,721,149	-				-2.1
2,721,149	-				-1.1
2,721,337	-				-0.5
2,721,710	-		PP_2382	0.19	-0.1
2,721,712	+		PP_2382	0.19	-4.2
2,721,713	-		PP_2382	0.19	-1.6
2,721,781	+		PP_2382	0.25	+0.8
2,721,834	+		PP_2382	0.29	-1.0
2,721,835	-		PP_2382	0.29	+1.0
2,721,835	-		PP_2382	0.29	-0.8
2,721,886	+		PP_2382	0.33	-0.5
2,721,886	+		PP_2382	0.33	-0.9
2,721,967	+		PP_2382	0.40	-4.2
2,721,967	+		PP_2382	0.40	+1.5
2,721,968	-		PP_2382	0.40	+0.0
2,721,968	-		PP_2382	0.40	-0.2
2,722,013	+		PP_2382	0.44	+0.9
2,722,013	+		PP_2382	0.44	+0.3
2,722,031	+		PP_2382	0.45	-1.1
2,722,031	+		PP_2382	0.45	+0.6
2,722,032	-		PP_2382	0.45	-1.3
2,722,038	-		PP_2382	0.46	-0.4
2,722,058	+		PP_2382	0.47	+0.8
2,722,058	+		PP_2382	0.47	-0.3
2,722,058	+		PP_2382	0.47	-0.6
2,722,058	+		PP_2382	0.47	-1.0
2,722,058	+		PP_2382	0.47	-1.5
2,722,059	-		PP_2382	0.48	-1.8
2,722,059	-		PP_2382	0.48	-0.6
2,722,090	+		PP_2382	0.50	-2.2
2,722,257	+		PP_2382	0.64	-3.2
2,722,362	+		PP_2382	0.72	-0.0
2,722,362	+		PP_2382	0.72	-3.9
2,722,362	+		PP_2382	0.72	-2.5
2,722,363	-		PP_2382	0.72	-0.8
2,722,407	-		PP_2382	0.76	-0.1
2,722,531	-		PP_2382	0.86	+0.4
2,722,613	+				+0.3
2,722,634	-				-1.2
2,722,634	-				-0.5
2,722,691	+				+0.3
2,722,691	+				-2.0
2,722,691	+				+0.9
2,722,691	+				+0.3
2,722,692	-				-3.8
2,722,692	-				+0.5
2,722,692	-				+0.6
2,722,692	-				+0.5
2,722,692	-				-3.2
2,722,695	+				+0.6
2,722,695	+				+0.0
2,722,696	-				+0.2
2,722,696	-				-0.2
2,722,696	-				+0.3
2,722,696	-				-1.4
2,722,696	-				+0.3
2,722,696	-				-2.2
2,722,711	+				-0.2
2,722,712	-				+1.0
2,722,713	+				+1.6
2,722,713	+				+0.7
2,722,713	+				+1.6
2,722,713	+				-3.1
2,722,713	+				-1.2
2,722,714	-				+0.6
2,722,714	-				-0.3
2,722,714	-				+0.0
2,722,714	-				+1.6
2,723,469	+		PP_2383	0.85	+1.9
2,723,469	+		PP_2383	0.85	+1.0
2,723,469	+		PP_2383	0.85	-3.5
2,723,469	+		PP_2383	0.85	+1.0
2,723,470	-		PP_2383	0.86	+0.8
2,723,470	-		PP_2383	0.86	-2.9
2,723,470	-		PP_2383	0.86	+0.2
2,723,470	-		PP_2383	0.86	-0.3
2,723,473	+		PP_2383	0.86	-0.4
2,723,474	-		PP_2383	0.86	-0.2
2,723,474	-		PP_2383	0.86	-3.2
2,723,509	+				-1.3
2,723,509	+				+0.0
2,723,510	-				+0.1
2,723,512	+				+0.3
2,723,512	+				-0.3
2,723,513	-				+0.2
2,723,648	+		PP_2384	0.19	-2.9
2,723,648	+		PP_2384	0.19	-0.3
2,723,648	+		PP_2384	0.19	-0.8
2,723,648	+		PP_2384	0.19	+0.6
2,723,682	-		PP_2384	0.30	-1.0
2,723,682	-		PP_2384	0.30	+1.5
2,723,682	-		PP_2384	0.30	+0.1