Strain Fitness in Pseudomonas putida KT2440 around PP_2318

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,647,174	-				-1.2
2,647,213	-				-0.9
2,647,313	+				-0.0
2,647,939	+				+0.8
2,647,939	+				-1.9
2,647,939	+				+0.2
2,647,940	-				+0.8
2,647,940	-				+0.6
2,647,940	-				-1.9
2,647,973	-				+1.5
2,648,052	+				-0.1
2,648,053	-				-0.2
2,648,102	+		PP_2318	0.14	+0.6
2,648,106	-		PP_2318	0.15	+2.1
2,648,106	-		PP_2318	0.15	-3.0
2,648,106	-		PP_2318	0.15	+0.6
2,648,106	-				-1.8
2,648,268	-		PP_2318	0.42	-0.1
2,648,395	+		PP_2318	0.63	+0.6
2,648,395	+		PP_2318	0.63	-0.5
2,648,422	-		PP_2318	0.67	+0.4
2,648,422	-		PP_2318	0.67	+0.6
2,648,433	+		PP_2318	0.69	+1.3
2,648,457	+		PP_2318	0.73	+1.2
2,648,628	-				+0.1
2,648,649	-				+0.7
2,648,704	+		PP_2319	0.17	-0.3
2,648,704	+		PP_2319	0.17	+1.1
2,648,704	+		PP_2319	0.17	-2.8
2,648,704	+		PP_2319	0.17	-0.1
2,648,705	-		PP_2319	0.17	-0.7
2,648,705	-		PP_2319	0.17	-2.1
2,648,710	+		PP_2319	0.19	+1.1
2,648,710	+		PP_2319	0.19	+1.4
2,648,815	-		PP_2319	0.51	-0.8
2,648,815	-		PP_2319	0.51	+1.0
2,649,042	+				+0.7
2,649,139	+				-1.2
2,649,225	+		PP_2320	0.14	-1.0
2,649,225	+		PP_2320	0.14	-1.6
2,649,403	-		PP_2320	0.33	-1.7
2,649,411	+		PP_2320	0.33	-0.4
2,649,412	-		PP_2320	0.34	-0.0
2,649,412	-		PP_2320	0.34	+0.0
2,649,414	+		PP_2320	0.34	-0.8
2,649,414	+		PP_2320	0.34	-1.2
2,649,415	-		PP_2320	0.34	-1.4
2,649,415	-		PP_2320	0.34	-0.8
2,649,415	-		PP_2320	0.34	-5.3
2,649,441	+		PP_2320	0.37	+0.5
2,649,441	+		PP_2320	0.37	-1.1
2,649,441	+		PP_2320	0.37	-1.3
2,649,441	+		PP_2320	0.37	+0.2
2,649,442	-		PP_2320	0.37	-2.4