Strain Fitness in Pseudomonas putida KT2440 around PP_2249

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,564,370	+		PP_2248	0.44	-0.9
2,564,469	+		PP_2248	0.53	+1.3
2,564,469	+		PP_2248	0.53	-1.3
2,564,469	+		PP_2248	0.53	+0.0
2,564,469	+		PP_2248	0.53	+0.5
2,564,469	+		PP_2248	0.53	-0.3
2,564,470	-		PP_2248	0.53	+0.9
2,564,470	-		PP_2248	0.53	-0.2
2,564,470	-		PP_2248	0.53	-0.0
2,564,470	-		PP_2248	0.53	+1.5
2,564,470	-		PP_2248	0.53	-1.4
2,564,470	-		PP_2248	0.53	+0.7
2,564,478	+		PP_2248	0.54	+0.4
2,564,478	+		PP_2248	0.54	-1.5
2,564,479	-		PP_2248	0.54	-2.1
2,564,479	-		PP_2248	0.54	-2.8
2,564,480	+		PP_2248	0.54	+0.5
2,564,481	-		PP_2248	0.54	+0.3
2,564,481	-		PP_2248	0.54	+0.8
2,564,834	+		PP_2248	0.88	+0.7
2,564,887	-				-0.2
2,564,915	-				+0.2
2,564,964	+				-2.5
2,564,965	-				+0.2
2,564,965	-				-1.4
2,564,993	+				+1.4
2,565,317	-		PP_2249	0.15	-1.7
2,565,317	-		PP_2249	0.15	+0.3
2,565,317	-		PP_2249	0.15	-2.4
2,565,317	-		PP_2249	0.15	-0.2
2,565,317	-		PP_2249	0.15	+1.0
2,565,317	-		PP_2249	0.15	-1.8
2,565,871	+		PP_2249	0.44	+0.4
2,565,871	+		PP_2249	0.44	-0.4
2,565,872	-		PP_2249	0.44	+0.3
2,565,898	+		PP_2249	0.45	-0.9
2,566,107	+		PP_2249	0.56	-3.0
2,566,107	+		PP_2249	0.56	-4.2
2,566,108	-		PP_2249	0.56	-0.9
2,566,140	+		PP_2249	0.58	-0.4
2,566,141	-		PP_2249	0.58	-0.2
2,566,252	-		PP_2249	0.64	-2.8
2,566,252	-		PP_2249	0.64	-3.2
2,566,285	+		PP_2249	0.65	-1.7
2,566,527	+		PP_2249	0.78	-3.7
2,566,611	+		PP_2249	0.82	-2.4
2,566,804	+				-2.3
2,566,804	+				-0.2
2,566,805	-				+1.8
2,566,805	-				+0.3
2,566,805	-				+0.8
2,566,818	+				+0.4
2,566,818	+				-3.7
2,566,819	-				-2.8
2,566,819	-				+1.0
2,566,828	-				-1.2
2,566,828	-				+1.5
2,567,121	-				-0.6
2,567,150	+		PP_2250	0.11	-1.0
2,567,150	+		PP_2250	0.11	+1.1
2,567,150	+		PP_2250	0.11	-1.7
2,567,379	-		PP_2250	0.38	-0.1
2,567,421	+		PP_2250	0.42	-0.1
2,567,487	+		PP_2250	0.50	-0.6
2,567,579	+		PP_2250	0.60	+0.6
2,567,579	+		PP_2250	0.60	+0.9
2,567,579	+		PP_2250	0.60	-4.2
2,567,580	-		PP_2250	0.60	+1.8
2,567,580	-		PP_2250	0.60	+0.1
2,567,580	-				-1.7
2,567,583	+		PP_2250	0.61	+0.6
2,567,583	+		PP_2250	0.61	-1.0
2,567,583	+		PP_2250	0.61	+1.7
2,567,583	+		PP_2250	0.61	-0.8
2,567,584	-		PP_2250	0.61	-3.3
2,567,584	-		PP_2250	0.61	+1.2