Strain Fitness in Pseudomonas putida KT2440 around PP_2229

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,534,840	+		PP_2228	0.44	+1.7
2,534,841	-		PP_2228	0.44	+1.1
2,534,855	+		PP_2228	0.45	+1.6
2,534,855	+		PP_2228	0.45	-0.7
2,534,856	-		PP_2228	0.45	+0.9
2,534,856	-		PP_2228	0.45	-0.4
2,534,856	-		PP_2228	0.45	+0.2
2,535,001	+		PP_2228	0.53	-2.0
2,535,001	+		PP_2228	0.53	-1.9
2,535,002	-		PP_2228	0.54	-1.2
2,535,062	-		PP_2228	0.57	+0.4
2,535,096	-		PP_2228	0.59	-3.0
2,535,169	-		PP_2228	0.63	-0.2
2,535,224	-		PP_2228	0.67	+0.2
2,535,280	+		PP_2228	0.70	-2.6
2,535,280	+		PP_2228	0.70	+1.1
2,535,281	-		PP_2228	0.70	-0.0
2,535,281	-		PP_2228	0.70	+1.6
2,535,335	-		PP_2228	0.73	+0.5
2,535,335	-				-0.7
2,535,335	-		PP_2228	0.73	-0.2
2,535,404	-		PP_2228	0.77	-0.8
2,535,404	-		PP_2228	0.77	+0.9
2,535,478	-		PP_2228	0.82	+0.6
2,535,731	+				+1.4
2,535,922	-		PP_2229	0.41	+0.5
2,535,922	-		PP_2229	0.41	+1.4
2,536,015	-		PP_2229	0.68	+0.7
2,536,015	-		PP_2229	0.68	-0.4
2,536,047	+		PP_2229	0.78	-3.4
2,536,047	+		PP_2229	0.78	+1.1
2,536,047	-		PP_2229	0.78	+2.6
2,536,048	-		PP_2229	0.78	-2.3
2,536,048	-		PP_2229	0.78	+0.2
2,536,169	+				-2.3
2,536,235	+				-0.6
2,536,235	+				+0.9
2,536,235	+				-3.4
2,536,235	+				+2.0
2,536,235	+				-2.7
2,536,235	+				-3.4
2,536,236	-				-3.5
2,536,238	-				+1.0
2,536,445	+		PP_2230	0.11	+1.4
2,536,446	-		PP_2230	0.11	+1.2
2,536,527	-		PP_2230	0.14	-2.5
2,536,527	-		PP_2230	0.14	-0.1
2,536,603	-		PP_2230	0.16	-0.4
2,536,603	-		PP_2230	0.16	-0.8
2,536,745	-		PP_2230	0.21	+0.5
2,536,745	-		PP_2230	0.21	+0.3
2,536,841	+		PP_2230	0.25	-2.1
2,536,887	-		PP_2230	0.26	-0.0
2,536,887	-		PP_2230	0.26	+1.3
2,536,887	-		PP_2230	0.26	-2.5
2,537,032	+		PP_2230	0.31	-0.1
2,537,032	+		PP_2230	0.31	+0.7