Strain Fitness in Pseudomonas putida KT2440 around PP_1979

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,242,026	+				+0.7
2,242,072	-		PP_t29	0.11	-1.8
2,242,072	-				-1.0
2,242,072	-		PP_t29	0.11	+0.3
2,242,072	-		PP_t29	0.11	+0.6
2,242,129	+		PP_t29	0.86	-0.0
2,242,180	-				-1.9
2,242,284	-				-0.6
2,242,379	-				+0.6
2,242,560	+		PP_1978	0.24	+0.1
2,242,560	+		PP_1978	0.24	+1.1
2,242,560	+		PP_1978	0.24	-2.6
2,242,560	+		PP_1978	0.24	-1.5
2,242,561	-		PP_1978	0.25	-2.0
2,242,561	-		PP_1978	0.25	+0.6
2,242,589	+		PP_1978	0.30	+0.7
2,242,589	+		PP_1978	0.30	+0.9
2,242,589	+		PP_1978	0.30	-0.5
2,242,589	+		PP_1978	0.30	-0.2
2,242,590	-		PP_1978	0.30	+0.4
2,242,590	-		PP_1978	0.30	-1.7
2,242,590	-		PP_1978	0.30	-1.5
2,242,590	-		PP_1978	0.30	+1.1
2,242,695	+		PP_1978	0.49	-1.2
2,242,695	+		PP_1978	0.49	-3.4
2,242,696	-		PP_1978	0.50	-3.1
2,242,726	+		PP_1978	0.55	-3.3
2,242,726	+		PP_1978	0.55	+0.6
2,242,727	-		PP_1978	0.55	+1.3
2,242,988	+				-1.0
2,242,989	-				-0.3
2,242,989	-				-0.6
2,243,139	-		PP_1979	0.18	+0.8
2,243,139	-		PP_1979	0.18	-0.0
2,243,264	+		PP_1979	0.32	+1.7
2,243,265	-		PP_1979	0.32	+1.7
2,243,265	-		PP_1979	0.32	+0.7
2,243,798	+				+0.9
2,243,832	-				+0.6
2,243,886	-				-1.9
2,243,887	+				-0.0
2,243,887	+				+0.7
2,243,888	-				+0.8
2,244,510	+				+0.6
2,244,510	+				-0.6
2,244,510	+				-1.7
2,244,510	+				+0.9
2,244,511	-				-2.3
2,244,511	-				-2.8
2,244,511	-				+0.4
2,244,678	+		PP_1981	0.23	+1.2
2,244,678	+		PP_1981	0.23	+0.5
2,244,679	-		PP_1981	0.23	-0.0