Strain Fitness in Pseudomonas putida KT2440 around PP_1943

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
2,197,246	-		PP_1942	0.23	-3.8
2,197,410	+		PP_1942	0.40	-3.5
2,197,410	+		PP_1942	0.40	-0.1
2,197,423	-		PP_1942	0.41	-0.3
2,197,433	+		PP_1942	0.42	+2.6
2,197,434	-		PP_1942	0.42	-2.6
2,197,434	-		PP_1942	0.42	-1.5
2,197,434	-		PP_1942	0.42	+0.9
2,197,531	+		PP_1942	0.52	+2.5
2,197,531	+		PP_1942	0.52	+0.3
2,197,536	+		PP_1942	0.53	-1.4
2,197,548	+		PP_1942	0.54	-1.1
2,197,549	-		PP_1942	0.54	+1.4
2,197,554	-		PP_1942	0.55	+0.1
2,197,683	-		PP_1942	0.68	+0.5
2,197,782	+		PP_1942	0.79	+0.9
2,197,783	-		PP_1942	0.79	+0.4
2,197,849	+		PP_1942	0.85	-2.0
2,197,849	+		PP_1942	0.85	+0.4
2,197,862	+		PP_1942	0.87	+0.8
2,197,862	+		PP_1942	0.87	-1.3
2,197,862	+		PP_1942	0.87	+0.2
2,197,863	-		PP_1942	0.87	-0.6
2,197,863	-		PP_1942	0.87	-2.1
2,197,971	+				+0.8
2,198,004	+				+1.3
2,198,010	+				-2.6
2,198,029	+				-3.8
2,198,044	+				-0.2
2,198,045	-				+0.2
2,198,045	-				-1.8
2,198,052	+				+0.1
2,198,083	+				+0.2
2,198,096	+				+0.9
2,198,097	-				-0.5
2,198,097	-				+1.0
2,198,122	+				+1.7
2,198,131	+				-1.4
2,198,131	+				+1.3
2,198,147	+				+0.2
2,198,150	+				+0.4
2,198,295	-				+0.4
2,198,513	-		PP_1943	0.32	+1.0
2,198,758	-		PP_1943	0.60	+0.6
2,198,940	-		PP_1943	0.81	+1.4
2,198,940	-		PP_1943	0.81	+1.6
2,198,962	+		PP_1943	0.84	+0.6
2,198,962	+		PP_1943	0.84	+1.8
2,198,963	-		PP_1943	0.84	+1.5
2,198,963	-		PP_1943	0.84	+1.0
2,198,963	-		PP_1943	0.84	+1.1
2,199,134	-				+1.5
2,199,171	+				+1.2
2,199,284	+		PP_1944	0.12	+0.7
2,199,377	+		PP_1944	0.19	-1.7
2,199,471	+		PP_1944	0.26	-3.7
2,199,471	+		PP_1944	0.26	-0.6
2,199,493	-		PP_1944	0.28	+0.6
2,199,717	+		PP_1944	0.46	-0.5
2,199,718	-		PP_1944	0.46	-0.5
2,199,747	+		PP_1944	0.48	+1.3
2,199,747	+		PP_1944	0.48	-0.1
2,199,818	+		PP_1944	0.53	+0.3
2,199,818	+		PP_1944	0.53	-0.0
2,199,818	+		PP_1944	0.53	+0.8
2,199,819	-		PP_1944	0.54	+1.2
2,199,825	+		PP_1944	0.54	-1.3
2,199,825	+		PP_1944	0.54	-1.0
2,199,861	+		PP_1944	0.57	+1.1
2,199,861	+		PP_1944	0.57	+0.7
2,199,862	-		PP_1944	0.57	+0.6
2,199,936	-				+1.0
2,199,936	-		PP_1944	0.63	+1.4
2,199,940	+		PP_1944	0.63	+0.6
2,199,941	-		PP_1944	0.63	-3.5
2,200,007	+		PP_1944	0.68	+0.7
2,200,007	+		PP_1944	0.68	+0.3