Strain Fitness in Pseudomonas putida KT2440 around PP_1481

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,684,412	+		PP_1478	0.89	+1.8
1,684,504	-				+1.5
1,684,527	-				-1.6
1,684,527	-				-3.6
1,684,611	-		PP_1479	0.22	+1.4
1,684,666	+		PP_1479	0.38	+0.8
1,684,667	-		PP_1479	0.38	+0.6
1,684,711	+		PP_1479	0.52	-1.2
1,684,712	-		PP_1479	0.52	+0.2
1,684,712	-		PP_1479	0.52	+1.1
1,684,810	-		PP_1479	0.81	+0.8
1,684,847	-				+1.0
1,684,863	+				-0.7
1,684,863	+				-0.7
1,684,863	+				-2.4
1,684,863	+				-2.1
1,684,864	-				-1.9
1,684,864	-				-4.0
1,684,864	-				-0.8
1,684,864	-				+0.7
1,684,878	-				+0.3
1,684,913	+		PP_1480	0.18	-0.2
1,684,913	+		PP_1480	0.18	-1.7
1,684,956	+		PP_1480	0.35	+0.6
1,684,956	+		PP_1480	0.35	-1.8
1,684,957	-		PP_1480	0.35	+0.5
1,684,976	-		PP_1480	0.42	-0.2
1,685,029	-		PP_1480	0.63	-1.5
1,685,156	-				-0.2
1,685,156	-				+0.7
1,685,156	-				-0.6
1,685,156	-				-0.9
1,685,159	+				-0.9
1,685,159	+				-0.5
1,685,159	+				-3.4
1,685,159	+				-1.2
1,685,160	-				-0.5
1,685,160	-				+0.5
1,685,176	+				-1.7
1,685,176	+				+1.7
1,685,176	+				-0.7
1,685,177	-				-0.1
1,685,177	-				-0.7
1,685,183	-				+1.2
1,685,183	-				-1.1
1,685,201	+				-0.9
1,685,298	+				+0.3
1,685,298	+				-1.3
1,685,299	-				-0.1
1,685,299	-				+0.4
1,685,323	-				-1.4
1,685,330	+				-2.3
1,685,330	+				+0.4
1,685,330	+				-0.5
1,685,332	+				-3.2
1,685,332	+				-0.7
1,685,332	+				+2.0
1,685,333	-				-3.3
1,685,338	+				-0.8
1,685,338	+				+0.2
1,685,338	+				+0.3
1,685,388	+				-1.1
1,685,388	+				+0.0
1,685,388	+				+1.2
1,685,403	+				-1.0
1,685,403	+				+0.3
1,685,403	+				-0.6
1,685,403	+				+1.2
1,685,404	-				+1.5
1,685,499	+		PP_1481	0.10	-1.0
1,685,499	+		PP_1481	0.10	-1.4
1,685,568	+		PP_1481	0.15	+0.6
1,685,867	+		PP_1481	0.36	-0.3
1,685,901	+		PP_1481	0.38	-1.3
1,685,901	+		PP_1481	0.38	+0.7
1,685,901	+		PP_1481	0.38	-0.6
1,685,901	+		PP_1481	0.38	-1.4
1,685,901	+		PP_1481	0.38	-0.8
1,685,902	-		PP_1481	0.38	+0.7
1,685,902	-		PP_1481	0.38	-2.7
1,685,919	+		PP_1481	0.40	+0.0
1,685,919	+		PP_1481	0.40	-2.0
1,685,919	+		PP_1481	0.40	-0.1
1,685,959	-		PP_1481	0.42	-0.4
1,686,143	+		PP_1481	0.55	-0.1
1,686,143	+		PP_1481	0.55	-2.2
1,686,330	+		PP_1481	0.68	-1.4
1,686,402	+		PP_1481	0.74	-0.5
1,686,842	+				+0.2
1,686,842	+				-0.2
1,686,843	-				-3.1
1,686,843	-				-0.3
1,686,843	-				+0.4
1,687,064	+		PP_1482	0.33	-1.8
1,687,065	-		PP_1482	0.33	+1.2
1,687,065	-		PP_1482	0.33	+0.2
1,687,157	+		PP_1482	0.45	+0.5
1,687,158	-		PP_1482	0.45	+0.3
1,687,158	-		PP_1482	0.45	-1.0
1,687,193	-		PP_1482	0.49	-0.1
1,687,354	-		PP_1482	0.69	-2.6
1,687,635	+				+0.5
1,687,635	+				-0.8
1,687,636	-				+0.6
1,687,636	-				+0.5
1,687,636	-				+0.9
1,687,636	-				-1.2
1,687,713	+		PP_1483	0.13	+0.6
1,687,713	+		PP_1483	0.13	+1.0
1,687,714	-		PP_1483	0.13	-1.5
1,687,714	-		PP_1483	0.13	-0.2
1,687,714	-		PP_1483	0.13	+0.0