Strain Fitness in Pseudomonas putida KT2440 around PP_1468

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,672,001	+		PP_1467	0.51	+1.3
1,672,002	-		PP_1467	0.51	+0.4
1,672,191	-		PP_1467	0.61	+1.4
1,672,230	+		PP_1467	0.64	+0.8
1,672,230	+		PP_1467	0.64	+0.8
1,672,231	-		PP_1467	0.64	-0.8
1,672,231	-		PP_1467	0.64	+1.6
1,672,348	+		PP_1467	0.70	-0.5
1,672,377	+		PP_1467	0.72	+0.6
1,672,900	-				-3.6
1,672,900	-				+1.5
1,672,900	-				-3.8
1,672,914	-				+0.9
1,672,923	+				+1.0
1,672,924	-				-1.3
1,672,924	-				+0.7
1,672,924	-				-3.9
1,673,003	+				+0.6
1,673,158	+		PP_1468	0.22	+1.0
1,673,387	-		PP_1468	0.48	+1.4
1,673,533	+		PP_1468	0.64	+0.2
1,673,637	+		PP_1468	0.76	-0.5
1,673,791	+				+1.2
1,673,791	+				-0.2
1,673,791	+				+1.3
1,673,791	+				+1.2
1,673,791	+				+0.8
1,673,791	+				-0.3
1,673,792	-				+0.3
1,673,792	-				-0.3
1,673,794	-				+1.1
1,673,915	-				+1.4
1,673,915	-				-0.2
1,673,915	-				-1.3
1,673,957	-				-3.3
1,674,054	+		PP_1469	0.11	+0.5
1,674,054	+		PP_1469	0.11	-0.4
1,674,055	-		PP_1469	0.11	+0.1
1,674,082	-		PP_1469	0.15	+1.8
1,674,111	+		PP_1469	0.18	-0.7
1,674,111	+		PP_1469	0.18	-0.6
1,674,111	+		PP_1469	0.18	+0.7
1,674,181	+		PP_1469	0.27	+0.4
1,674,181	+		PP_1469	0.27	-3.8
1,674,181	+		PP_1469	0.27	-0.9
1,674,181	+		PP_1469	0.27	+0.9
1,674,182	-		PP_1469	0.27	-0.4
1,674,214	+		PP_1469	0.31	+0.2
1,674,215	-		PP_1469	0.32	-2.8
1,674,250	+		PP_1469	0.36	+0.9
1,674,251	-		PP_1469	0.36	+0.3
1,674,312	+		PP_1469	0.44	+0.1
1,674,408	+		PP_1469	0.56	+0.2
1,674,408	+		PP_1469	0.56	-0.3
1,674,408	+		PP_1469	0.56	-1.4
1,674,408	+		PP_1469	0.56	+0.0
1,674,478	+		PP_1469	0.65	-0.5
1,674,479	-				-1.6
1,674,748	+				-0.1
1,674,748	+				-3.0
1,674,748	+				-1.1
1,674,748	+				+0.8
1,674,761	+				+1.0
1,674,761	+				+0.0