Strain Fitness in Pseudomonas putida KT2440 around PP_1110

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,268,615	-		PP_1109	0.39	+0.6
1,269,019	+		PP_1109	0.69	+0.4
1,269,020	-		PP_1109	0.69	+0.4
1,269,244	+		PP_1109	0.86	+1.4
1,269,245	-		PP_1109	0.86	+1.0
1,269,759	-		PP_1110	0.21	+0.8
1,269,862	+				-1.0
1,269,902	-		PP_1110	0.41	+1.4
1,269,910	-		PP_1110	0.42	+1.0
1,270,084	+		PP_1110	0.67	+1.3
1,270,085	-		PP_1110	0.67	+0.6
1,270,249	-				+0.1
1,270,329	+				+1.4
1,270,363	-				+0.2
1,270,437	-		PP_1111	0.16	+0.7
1,270,544	+		PP_1111	0.29	+0.4
1,270,590	-		PP_1111	0.35	+1.1
1,270,590	-		PP_1111	0.35	-0.3
1,270,661	+		PP_1111	0.44	+0.5
1,270,719	+		PP_1111	0.51	-3.1
1,270,719	+		PP_1111	0.51	+0.3
1,270,775	+		PP_1111	0.58	-2.5
1,270,897	-		PP_1111	0.74	+1.0
1,270,897	-		PP_1111	0.74	+1.3
1,270,935	+		PP_1111	0.79	+1.0
1,270,935	+		PP_1111	0.79	-2.8
1,270,936	-		PP_1111	0.79	+1.5
1,270,936	-		PP_1111	0.79	+0.0
1,270,936	-		PP_1111	0.79	-0.1
1,270,936	-		PP_1111	0.79	-0.5
1,270,983	-		PP_1111	0.85	+1.0
1,270,983	-		PP_1111	0.85	+1.6
1,271,024	+				+2.5
1,271,083	-				+0.9
1,271,083	-				+1.1
1,271,099	-				+0.6
1,271,099	-				+1.2
1,271,099	-				-1.8
1,271,099	-				-0.1
1,271,126	+				-0.5
1,271,127	-				+0.0
1,271,132	+				-0.0
1,271,132	+				-1.9
1,271,133	-				+0.7