Strain Fitness in Pseudomonas putida KT2440 around PP_0992

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,130,493	-		PP_0990	0.63	-3.2
1,130,493	-		PP_0990	0.63	+0.9
1,130,505	+		PP_0990	0.66	-1.5
1,130,506	-		PP_0990	0.66	+0.9
1,130,526	+		PP_0990	0.72	-0.3
1,130,526	+				-0.8
1,130,526	+		PP_0990	0.72	-0.9
1,130,526	+		PP_0990	0.72	-0.9
1,130,526	+		PP_0990	0.72	+1.4
1,130,527	-				+0.9
1,130,527	-		PP_0990	0.72	-0.3
1,130,527	-		PP_0990	0.72	-0.5
1,130,527	-		PP_0990	0.72	-0.3
1,130,527	-		PP_0990	0.72	-0.9
1,130,539	+		PP_0990	0.75	+1.4
1,130,539	+		PP_0990	0.75	+0.8
1,130,539	+				+0.1
1,130,540	-		PP_0990	0.75	+1.2
1,130,540	-		PP_0990	0.75	-1.7
1,130,901	+		PP_0991	0.25	+1.1
1,130,901	+		PP_0991	0.25	-1.5
1,130,901	+		PP_0991	0.25	+0.8
1,130,902	-		PP_0991	0.25	+0.7
1,130,902	-		PP_0991	0.25	+0.4
1,130,998	+		PP_0991	0.37	-3.4
1,130,998	+		PP_0991	0.37	+1.0
1,130,998	+		PP_0991	0.37	+0.9
1,131,173	-		PP_0991	0.60	+1.0
1,131,230	-		PP_0991	0.67	-0.1
1,131,271	+		PP_0991	0.73	+0.2
1,131,271	+		PP_0991	0.73	-0.1
1,131,271	+		PP_0991	0.73	-0.1
1,131,272	-		PP_0991	0.73	-0.8
1,131,272	-		PP_0991	0.73	+0.4
1,131,488	+				-1.3
1,131,488	+				-4.0
1,131,488	+				-1.8
1,131,488	+				-1.4
1,131,488	+				-2.4
1,131,489	-				+0.4
1,131,489	-				+2.6
1,131,489	-				-0.1
1,131,489	-				-0.9
1,131,626	+		PP_0992	0.18	+0.9
1,131,879	+		PP_0992	0.48	-1.4
1,131,879	+		PP_0992	0.48	+0.2
1,131,880	-		PP_0992	0.48	-0.4
1,131,880	-		PP_0992	0.48	-2.2
1,131,999	+		PP_0992	0.62	-0.1
1,131,999	+		PP_0992	0.62	-0.6
1,132,038	-		PP_0992	0.67	-0.2
1,132,038	-		PP_0992	0.67	+0.6
1,132,200	+		PP_0992	0.86	-1.7
1,132,200	+		PP_0992	0.86	-4.0
1,132,200	+		PP_0992	0.86	-1.4
1,132,201	-		PP_0992	0.87	-0.7
1,132,201	-		PP_0992	0.87	+0.9
1,132,201	-		PP_0992	0.87	-2.0
1,132,340	+				+0.0
1,132,340	+				+1.1
1,132,340	+				-3.0
1,132,340	+				+0.0
1,132,340	+				+0.4
1,132,340	+				-0.5
1,132,341	-				+0.0
1,132,341	-				+0.4
1,132,341	-				+0.5
1,132,647	+				+4.1
1,132,668	-				+0.7
1,132,668	-				-0.7
1,132,684	-				-3.4
1,132,684	-				-2.2
1,132,761	+				+0.3
1,132,761	+				-3.3
1,132,762	-				-1.0
1,132,762	-				-0.9
1,132,762	-				-0.3
1,132,814	+				-0.0
1,132,825	+				-2.9
1,132,825	+				-0.4
1,132,826	-				+1.8
1,132,826	-				+0.8
1,132,852	-				-0.1
1,132,933	+				+2.1
1,132,933	+				+1.5
1,132,934	-				+0.2
1,132,967	+		PP_0994	0.15	-0.3
1,132,967	+		PP_0994	0.15	-3.6
1,132,967	+		PP_0994	0.15	+1.3
1,132,967	+		PP_0994	0.15	-4.2
1,132,967	+		PP_0994	0.15	+0.9
1,132,968	-		PP_0994	0.15	-1.9
1,132,968	-		PP_0994	0.15	-0.2
1,132,968	-		PP_0994	0.15	-1.2
1,132,968	-		PP_0994	0.15	+0.3
1,133,036	+		PP_0994	0.28	-1.0
1,133,037	-		PP_0994	0.28	-3.0
1,133,066	-		PP_0994	0.33	+0.8