Strain Fitness in Pseudomonas putida KT2440 around PP_0536

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0535 and PP_0536 are separated by 161 nucleotidesPP_0536 and PP_0537 are separated by 524 nucleotides PP_0535: PP_0535 - Outer membrane ferric siderophore receptor, at 620,871 to 623,048 _0535 PP_0536: PP_0536 - conserved protein of unknown function, at 623,210 to 623,680 _0536 PP_0537: PP_0537 - putative transcriptional regulator, at 624,205 to 624,906 _0537 Position (kb) 623 624Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 622.270 kb on - strand, within PP_0535at 622.270 kb on - strand, within PP_0535at 622.295 kb on + strand, within PP_0535at 622.296 kb on - strand, within PP_0535at 622.296 kb on - strand, within PP_0535at 622.296 kb on - strand, within PP_0535at 622.353 kb on + strand, within PP_0535at 622.354 kb on - strand, within PP_0535at 622.380 kb on + strand, within PP_0535at 622.380 kb on + strand, within PP_0535at 622.380 kb on + strand, within PP_0535at 622.381 kb on - strand, within PP_0535at 622.381 kb on - strand, within PP_0535at 622.385 kb on + strand, within PP_0535at 622.389 kb on + strand, within PP_0535at 622.389 kb on + strand, within PP_0535at 622.390 kb on - strand, within PP_0535at 622.465 kb on - strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.488 kb on + strand, within PP_0535at 622.489 kb on - strand, within PP_0535at 622.489 kb on - strand, within PP_0535at 622.509 kb on - strand, within PP_0535at 622.550 kb on + strand, within PP_0535at 622.560 kb on + strand, within PP_0535at 622.560 kb on + strand, within PP_0535at 622.561 kb on - strand, within PP_0535at 622.561 kb on - strand, within PP_0535at 622.767 kb on + strand, within PP_0535at 622.767 kb on + strand, within PP_0535at 622.768 kb on - strand, within PP_0535at 622.768 kb on - strand, within PP_0535at 622.837 kb on - strandat 622.837 kb on - strandat 622.943 kb on + strandat 622.944 kb on - strandat 622.944 kb on - strandat 622.962 kb on + strandat 622.963 kb on - strandat 622.963 kb on - strandat 623.037 kb on + strandat 623.038 kb on - strandat 623.065 kb on + strandat 623.140 kb on + strandat 623.150 kb on - strandat 623.241 kb on - strandat 623.422 kb on + strand, within PP_0536at 623.491 kb on + strand, within PP_0536at 623.492 kb on - strand, within PP_0536at 623.492 kb on - strand, within PP_0536at 623.552 kb on - strand, within PP_0536at 623.594 kb on + strand, within PP_0536at 623.595 kb on - strand, within PP_0536at 623.683 kb on + strandat 623.684 kb on - strandat 623.697 kb on + strandat 623.857 kb on + strandat 623.857 kb on + strandat 623.858 kb on - strandat 623.860 kb on - strandat 623.977 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.025 kb on + strandat 624.026 kb on - strandat 624.047 kb on - strandat 624.141 kb on + strandat 624.142 kb on - strandat 624.142 kb on - strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.158 kb on + strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.159 kb on - strandat 624.293 kb on + strand, within PP_0537at 624.293 kb on + strand, within PP_0537at 624.294 kb on - strand, within PP_0537at 624.308 kb on + strand, within PP_0537at 624.309 kb on - strand, within PP_0537at 624.309 kb on - strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.335 kb on + strand, within PP_0537at 624.336 kb on + strand, within PP_0537at 624.336 kb on - strand, within PP_0537at 624.401 kb on + strand, within PP_0537at 624.451 kb on - strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.602 kb on + strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.603 kb on - strand, within PP_0537at 624.648 kb on + strand, within PP_0537

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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622,270 - PP_0535 0.64 -0.8
622,270 - PP_0535 0.64 +1.2
622,295 + PP_0535 0.65 +0.6
622,296 - PP_0535 0.65 -2.3
622,296 - PP_0535 0.65 +0.4
622,296 - PP_0535 0.65 -1.2
622,353 + PP_0535 0.68 +0.6
622,354 - PP_0535 0.68 +0.4
622,380 + PP_0535 0.69 +1.3
622,380 + PP_0535 0.69 +0.7
622,380 + PP_0535 0.69 -0.1
622,381 - PP_0535 0.69 -4.0
622,381 - PP_0535 0.69 -0.1
622,385 + PP_0535 0.70 +0.4
622,389 + PP_0535 0.70 -0.8
622,389 + PP_0535 0.70 -1.8
622,390 - PP_0535 0.70 +0.7
622,465 - PP_0535 0.73 -1.1
622,488 + PP_0535 0.74 -2.5
622,488 + PP_0535 0.74 -3.3
622,488 + PP_0535 0.74 +1.1
622,488 + PP_0535 0.74 +1.0
622,488 + PP_0535 0.74 +1.1
622,489 - PP_0535 0.74 +0.1
622,489 - PP_0535 0.74 -0.1
622,509 - PP_0535 0.75 +0.6
622,550 + PP_0535 0.77 +0.3
622,560 + PP_0535 0.78 +0.6
622,560 + PP_0535 0.78 +1.2
622,561 - PP_0535 0.78 +0.4
622,561 - PP_0535 0.78 +0.6
622,767 + PP_0535 0.87 +0.8
622,767 + PP_0535 0.87 -0.8
622,768 - PP_0535 0.87 +1.1
622,768 - PP_0535 0.87 -0.6
622,837 - +0.4
622,837 - +0.3
622,943 + +1.3
622,944 - -3.2
622,944 - +0.4
622,962 + -1.3
622,963 - +0.9
622,963 - +1.5
623,037 + +1.7
623,038 - -0.6
623,065 + +0.1
623,140 + +1.3
623,150 - +0.8
623,241 - -0.1
623,422 + PP_0536 0.45 +1.1
623,491 + PP_0536 0.60 +0.8
623,492 - PP_0536 0.60 +0.4
623,492 - PP_0536 0.60 -3.8
623,552 - PP_0536 0.73 +0.7
623,594 + PP_0536 0.82 +1.1
623,595 - PP_0536 0.82 +0.9
623,683 + +0.2
623,684 - +1.5
623,697 + -0.0
623,857 + +0.8
623,857 + -1.5
623,858 - -3.4
623,860 - +0.7
623,977 + +0.5
624,025 + +0.4
624,025 + -3.2
624,025 + -1.3
624,025 + +0.3
624,026 - -0.8
624,047 - -0.4
624,141 + -0.8
624,142 - +1.4
624,142 - +0.9
624,158 + +0.7
624,158 + +0.7
624,158 + -0.6
624,158 + -1.0
624,158 + -3.6
624,158 + +0.5
624,159 - +0.7
624,159 - -3.6
624,159 - -3.5
624,159 - -2.0
624,159 - -0.5
624,159 - -1.0
624,159 - +0.1
624,159 - +0.4
624,293 + PP_0537 0.13 -2.4
624,293 + PP_0537 0.13 +1.2
624,294 - PP_0537 0.13 -1.0
624,308 + PP_0537 0.15 +0.3
624,309 - PP_0537 0.15 -1.3
624,309 - PP_0537 0.15 -0.1
624,335 + PP_0537 0.19 -1.0
624,335 + PP_0537 0.19 -1.0
624,335 + PP_0537 0.19 -0.2
624,335 + PP_0537 0.19 +2.1
624,336 + PP_0537 0.19 -0.8
624,336 - PP_0537 0.19 +0.4
624,401 + PP_0537 0.28 +1.0
624,451 - PP_0537 0.35 +0.2
624,602 + PP_0537 0.57 -3.0
624,602 + PP_0537 0.57 +1.2
624,602 + PP_0537 0.57 +0.2
624,602 + PP_0537 0.57 -0.4
624,602 + PP_0537 0.57 +0.4
624,603 - PP_0537 0.57 -0.5
624,603 - PP_0537 0.57 -1.5
624,603 - PP_0537 0.57 -1.9
624,603 - PP_0537 0.57 -1.0
624,603 - PP_0537 0.57 -0.1
624,603 - PP_0537 0.57 -0.2
624,648 + PP_0537 0.63 +0.2

Or see this region's nucleotide sequence