Strain Fitness in Pseudomonas putida KT2440 around PP_0143

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0142 and PP_0143 are separated by 131 nucleotidesPP_0143 and PP_0144 are separated by 93 nucleotides PP_0142: PP_0142 - putative ABC transporter, permease protein, at 149,816 to 150,949 _0142 PP_0143: PP_0143 - conserved membrane protein of unknown function, at 151,081 to 152,106 _0143 PP_0144: PP_0144 - Metalloprotease, insulinase family, at 152,200 to 153,606 _0144 Position (kb) 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 150.084 kb on - strand, within PP_0142at 150.396 kb on - strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.460 kb on + strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.461 kb on - strand, within PP_0142at 150.593 kb on - strand, within PP_0142at 150.649 kb on - strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.666 kb on + strand, within PP_0142at 150.858 kb on + strandat 150.859 kb on - strandat 150.859 kb on - strandat 150.883 kb on + strandat 150.883 kb on + strandat 150.884 kb on - strandat 150.886 kb on + strandat 150.886 kb on + strandat 150.886 kb on + strandat 150.886 kb on + strandat 150.940 kb on + strandat 150.940 kb on + strandat 150.941 kb on - strandat 150.941 kb on - strandat 150.941 kb on - strandat 150.941 kb on - strandat 150.941 kb on - strandat 150.974 kb on - strandat 150.986 kb on + strandat 150.987 kb on - strandat 151.016 kb on + strandat 151.016 kb on + strandat 151.016 kb on + strandat 151.016 kb on + strandat 151.016 kb on + strandat 151.017 kb on - strandat 151.017 kb on - strandat 151.017 kb on - strandat 151.017 kb on - strandat 151.029 kb on + strandat 151.030 kb on - strandat 151.087 kb on - strandat 151.087 kb on - strandat 151.217 kb on + strand, within PP_0143at 151.217 kb on + strand, within PP_0143at 151.218 kb on - strand, within PP_0143at 151.292 kb on + strand, within PP_0143at 151.334 kb on + strand, within PP_0143at 151.335 kb on - strand, within PP_0143at 151.335 kb on - strand, within PP_0143at 151.340 kb on + strand, within PP_0143at 151.340 kb on + strand, within PP_0143at 151.341 kb on - strand, within PP_0143at 151.341 kb on - strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.408 kb on + strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.409 kb on - strand, within PP_0143at 151.416 kb on + strand, within PP_0143at 151.715 kb on + strand, within PP_0143at 151.715 kb on + strand, within PP_0143at 151.716 kb on + strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.716 kb on - strand, within PP_0143at 151.718 kb on + strand, within PP_0143at 151.719 kb on - strand, within PP_0143at 152.089 kb on - strandat 152.114 kb on + strandat 152.114 kb on + strandat 152.115 kb on - strandat 152.115 kb on - strandat 152.191 kb on - strandat 152.214 kb on + strandat 152.214 kb on + strandat 152.214 kb on + strandat 152.315 kb on + strandat 152.320 kb on + strandat 152.320 kb on + strandat 152.320 kb on + strandat 152.321 kb on - strandat 152.321 kb on - strandat 152.345 kb on + strand, within PP_0144at 152.345 kb on + strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.346 kb on - strand, within PP_0144at 152.442 kb on + strand, within PP_0144at 152.442 kb on + strand, within PP_0144at 152.442 kb on + strand, within PP_0144at 152.445 kb on - strand, within PP_0144at 152.445 kb on - strand, within PP_0144at 152.445 kb on - strand, within PP_0144at 152.445 kb on - strand, within PP_0144at 152.465 kb on + strand, within PP_0144at 152.465 kb on + strand, within PP_0144at 152.466 kb on - strand, within PP_0144at 152.466 kb on - strand, within PP_0144at 152.466 kb on - strand, within PP_0144at 152.466 kb on - strand, within PP_0144at 152.469 kb on - strand, within PP_0144at 152.691 kb on - strand, within PP_0144at 152.723 kb on + strand, within PP_0144at 152.940 kb on - strand, within PP_0144

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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150,084 - PP_0142 0.24 +0.9
150,396 - PP_0142 0.51 +0.1
150,460 + PP_0142 0.57 +0.8
150,460 + PP_0142 0.57 +0.5
150,460 + PP_0142 0.57 -0.5
150,460 + PP_0142 0.57 +0.5
150,460 + PP_0142 0.57 +0.9
150,461 - PP_0142 0.57 +2.2
150,461 - PP_0142 0.57 -0.1
150,461 - PP_0142 0.57 -1.9
150,461 - PP_0142 0.57 +2.2
150,593 - PP_0142 0.69 -1.9
150,649 - PP_0142 0.73 +0.9
150,666 + PP_0142 0.75 +0.1
150,666 + PP_0142 0.75 -0.9
150,666 + PP_0142 0.75 -2.3
150,666 + PP_0142 0.75 -0.5
150,858 + +1.0
150,859 - -0.0
150,859 - +1.2
150,883 + -2.9
150,883 + -0.9
150,884 - +0.6
150,886 + -2.5
150,886 + -0.3
150,886 + +1.6
150,886 + +0.3
150,940 + -0.8
150,940 + -0.5
150,941 - +2.4
150,941 - -3.5
150,941 - -0.5
150,941 - -3.5
150,941 - -0.8
150,974 - +1.2
150,986 + -0.0
150,987 - +0.5
151,016 + +1.0
151,016 + -1.5
151,016 + +0.1
151,016 + +1.4
151,016 + -1.1
151,017 - -2.6
151,017 - -0.0
151,017 - +0.6
151,017 - -0.9
151,029 + +0.7
151,030 - -1.2
151,087 - +0.5
151,087 - +1.3
151,217 + PP_0143 0.13 +3.0
151,217 + PP_0143 0.13 -0.2
151,218 - PP_0143 0.13 +1.5
151,292 + PP_0143 0.21 +1.7
151,334 + PP_0143 0.25 -0.6
151,335 - PP_0143 0.25 -2.3
151,335 - PP_0143 0.25 -0.6
151,340 + PP_0143 0.25 +0.9
151,340 + PP_0143 0.25 +1.9
151,341 - PP_0143 0.25 +0.9
151,341 - PP_0143 0.25 -0.8
151,408 + PP_0143 0.32 +0.6
151,408 + PP_0143 0.32 +0.4
151,408 + PP_0143 0.32 +1.1
151,408 + PP_0143 0.32 +0.1
151,409 - PP_0143 0.32 +0.6
151,409 - PP_0143 0.32 +2.0
151,409 - PP_0143 0.32 +0.8
151,416 + PP_0143 0.33 -1.2
151,715 + PP_0143 0.62 +1.2
151,715 + PP_0143 0.62 +1.8
151,716 + PP_0143 0.62 +1.5
151,716 - PP_0143 0.62 +0.9
151,716 - PP_0143 0.62 +0.7
151,716 - PP_0143 0.62 -0.4
151,716 - PP_0143 0.62 +0.8
151,716 - PP_0143 0.62 +1.6
151,716 - PP_0143 0.62 -1.5
151,718 + PP_0143 0.62 +0.9
151,719 - PP_0143 0.62 +0.5
152,089 - -2.6
152,114 + +0.9
152,114 + +1.2
152,115 - -1.7
152,115 - +1.0
152,191 - +1.0
152,214 + -3.1
152,214 + -2.1
152,214 + -0.4
152,315 + -0.4
152,320 + +1.1
152,320 + +0.2
152,320 + +0.1
152,321 - -0.3
152,321 - -2.3
152,345 + PP_0144 0.10 +1.1
152,345 + PP_0144 0.10 +0.4
152,346 - PP_0144 0.10 -0.4
152,346 - PP_0144 0.10 +1.4
152,346 - PP_0144 0.10 +0.6
152,346 - PP_0144 0.10 -2.5
152,346 - PP_0144 0.10 +0.6
152,442 + PP_0144 0.17 -0.9
152,442 + PP_0144 0.17 -2.4
152,442 + PP_0144 0.17 -0.4
152,445 - PP_0144 0.17 -3.4
152,445 - PP_0144 0.17 -3.2
152,445 - PP_0144 0.17 +0.7
152,445 - PP_0144 0.17 +0.2
152,465 + PP_0144 0.19 -1.0
152,465 + PP_0144 0.19 -0.2
152,466 - PP_0144 0.19 +0.3
152,466 - PP_0144 0.19 +0.3
152,466 - PP_0144 0.19 +2.2
152,466 - PP_0144 0.19 +0.3
152,469 - PP_0144 0.19 -1.5
152,691 - PP_0144 0.35 -2.0
152,723 + PP_0144 0.37 -0.0
152,940 - PP_0144 0.53 +0.6

Or see this region's nucleotide sequence