Strain Fitness in Pseudomonas putida KT2440 around PP_0105

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0104 and PP_0105 are separated by 9 nucleotidesPP_0105 and PP_0106 are separated by 16 nucleotidesPP_0106 and PP_5427 are separated by 31 nucleotides PP_0104: PP_0104 - Cytochrome c oxidase subunit 1, at 109,981 to 111,570 _0104 PP_0105: PP_0105 - Cytochrome C oxidase assembly protein, at 111,580 to 112,146 _0105 PP_0106: PP_0106 - cytochrome c oxidase subunit 3, at 112,163 to 113,050 _0106 PP_5427: PP_5427 - conserved exported protein of unknown function, at 113,082 to 113,285 _5427 Position (kb) 111 112 113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 110.633 kb on + strand, within PP_0104at 110.634 kb on - strand, within PP_0104at 110.634 kb on - strand, within PP_0104at 110.634 kb on - strand, within PP_0104at 110.634 kb on - strand, within PP_0104at 110.761 kb on + strand, within PP_0104at 110.761 kb on + strand, within PP_0104at 110.762 kb on - strand, within PP_0104at 110.836 kb on + strandat 110.838 kb on + strand, within PP_0104at 110.838 kb on + strand, within PP_0104at 110.839 kb on - strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.851 kb on + strand, within PP_0104at 110.852 kb on - strand, within PP_0104at 110.901 kb on + strand, within PP_0104at 110.901 kb on + strand, within PP_0104at 110.901 kb on + strand, within PP_0104at 110.901 kb on + strand, within PP_0104at 110.902 kb on - strand, within PP_0104at 110.902 kb on - strand, within PP_0104at 110.902 kb on - strand, within PP_0104at 110.902 kb on - strand, within PP_0104at 110.987 kb on + strand, within PP_0104at 110.987 kb on + strand, within PP_0104at 110.988 kb on - strand, within PP_0104at 111.127 kb on + strand, within PP_0104at 111.139 kb on + strand, within PP_0104at 111.139 kb on + strand, within PP_0104at 111.139 kb on + strand, within PP_0104at 111.140 kb on - strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.163 kb on + strand, within PP_0104at 111.164 kb on - strand, within PP_0104at 111.164 kb on - strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.167 kb on + strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.168 kb on - strand, within PP_0104at 111.208 kb on + strand, within PP_0104at 111.241 kb on + strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.242 kb on - strand, within PP_0104at 111.320 kb on + strand, within PP_0104at 111.320 kb on + strand, within PP_0104at 111.355 kb on + strand, within PP_0104at 111.535 kb on + strandat 111.569 kb on - strandat 111.569 kb on - strandat 111.670 kb on + strand, within PP_0105at 111.671 kb on - strand, within PP_0105at 111.696 kb on + strand, within PP_0105at 111.721 kb on + strand, within PP_0105at 111.721 kb on + strand, within PP_0105at 111.808 kb on + strand, within PP_0105at 111.808 kb on + strand, within PP_0105at 111.809 kb on - strand, within PP_0105at 111.809 kb on - strand, within PP_0105at 111.909 kb on - strand, within PP_0105at 111.919 kb on - strand, within PP_0105at 111.970 kb on - strand, within PP_0105at 112.069 kb on + strand, within PP_0105at 112.181 kb on + strandat 112.181 kb on + strandat 112.181 kb on + strandat 112.181 kb on + strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.182 kb on - strandat 112.184 kb on + strandat 112.184 kb on + strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.185 kb on - strandat 112.337 kb on + strand, within PP_0106at 112.337 kb on + strand, within PP_0106at 112.337 kb on + strand, within PP_0106at 112.338 kb on - strand, within PP_0106at 112.392 kb on - strand, within PP_0106at 112.487 kb on + strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.488 kb on - strand, within PP_0106at 112.497 kb on + strand, within PP_0106at 112.778 kb on - strand, within PP_0106at 112.799 kb on + strand, within PP_0106at 112.799 kb on + strand, within PP_0106at 112.800 kb on - strand, within PP_0106at 112.802 kb on + strand, within PP_0106at 112.802 kb on + strand, within PP_0106at 112.802 kb on + strand, within PP_0106at 112.803 kb on - strand, within PP_0106at 112.811 kb on + strand, within PP_0106at 112.812 kb on - strand, within PP_0106at 112.814 kb on - strand, within PP_0106at 112.847 kb on + strand, within PP_0106at 112.848 kb on - strand, within PP_0106at 112.882 kb on - strand, within PP_0106at 112.991 kb on + strandat 113.039 kb on + strandat 113.039 kb on + strandat 113.039 kb on + strandat 113.040 kb on - strandat 113.052 kb on + strandat 113.065 kb on - strandat 113.065 kb on - strandat 113.139 kb on + strand, within PP_5427at 113.139 kb on + strand, within PP_5427at 113.139 kb on + strand, within PP_5427at 113.139 kb on + strand, within PP_5427at 113.139 kb on + strand, within PP_5427at 113.140 kb on - strand, within PP_5427at 113.140 kb on - strand, within PP_5427at 113.140 kb on - strand, within PP_5427at 113.140 kb on - strand, within PP_5427

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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110,633 + PP_0104 0.41 -0.0
110,634 - PP_0104 0.41 +0.2
110,634 - PP_0104 0.41 -0.6
110,634 - PP_0104 0.41 -1.9
110,634 - PP_0104 0.41 +0.8
110,761 + PP_0104 0.49 -0.2
110,761 + PP_0104 0.49 +0.9
110,762 - PP_0104 0.49 +0.5
110,836 + +2.8
110,838 + PP_0104 0.54 +0.7
110,838 + PP_0104 0.54 -1.8
110,839 - PP_0104 0.54 -0.7
110,851 + PP_0104 0.55 -0.2
110,851 + PP_0104 0.55 +0.4
110,851 + PP_0104 0.55 +0.5
110,851 + PP_0104 0.55 +1.2
110,851 + PP_0104 0.55 -0.3
110,852 - PP_0104 0.55 -0.2
110,901 + PP_0104 0.58 -4.2
110,901 + PP_0104 0.58 -2.1
110,901 + PP_0104 0.58 -1.7
110,901 + PP_0104 0.58 -4.5
110,902 - PP_0104 0.58 +0.3
110,902 - PP_0104 0.58 +0.3
110,902 - PP_0104 0.58 -1.2
110,902 - PP_0104 0.58 +0.5
110,987 + PP_0104 0.63 +0.6
110,987 + PP_0104 0.63 +0.3
110,988 - PP_0104 0.63 -3.8
111,127 + PP_0104 0.72 -0.8
111,139 + PP_0104 0.73 +1.4
111,139 + PP_0104 0.73 +1.2
111,139 + PP_0104 0.73 +1.1
111,140 - PP_0104 0.73 -1.8
111,163 + PP_0104 0.74 -0.7
111,163 + PP_0104 0.74 -1.7
111,163 + PP_0104 0.74 -0.5
111,163 + PP_0104 0.74 +0.2
111,163 + PP_0104 0.74 -0.8
111,164 - PP_0104 0.74 -0.0
111,164 - PP_0104 0.74 -3.4
111,167 + PP_0104 0.75 -1.3
111,167 + PP_0104 0.75 -0.5
111,167 + PP_0104 0.75 +0.6
111,167 + PP_0104 0.75 -0.6
111,167 + PP_0104 0.75 -1.8
111,168 - PP_0104 0.75 -0.0
111,168 - PP_0104 0.75 +0.2
111,168 - PP_0104 0.75 +0.3
111,208 + PP_0104 0.77 -0.1
111,241 + PP_0104 0.79 -0.2
111,242 - PP_0104 0.79 -0.7
111,242 - PP_0104 0.79 -2.7
111,242 - PP_0104 0.79 -0.2
111,320 + PP_0104 0.84 +1.2
111,320 + PP_0104 0.84 -1.1
111,355 + PP_0104 0.86 +0.8
111,535 + -0.6
111,569 - +1.2
111,569 - -1.6
111,670 + PP_0105 0.16 -4.0
111,671 - PP_0105 0.16 -0.5
111,696 + PP_0105 0.20 -3.8
111,721 + PP_0105 0.25 -0.6
111,721 + PP_0105 0.25 +0.7
111,808 + PP_0105 0.40 -3.2
111,808 + PP_0105 0.40 -3.6
111,809 - PP_0105 0.40 +0.8
111,809 - PP_0105 0.40 -1.9
111,909 - PP_0105 0.58 -3.1
111,919 - PP_0105 0.60 +0.4
111,970 - PP_0105 0.69 -1.5
112,069 + PP_0105 0.86 +0.8
112,181 + +0.1
112,181 + -0.0
112,181 + +2.0
112,181 + -1.2
112,182 - -1.5
112,182 - -1.4
112,182 - -0.3
112,182 - -1.0
112,182 - -0.9
112,184 + -1.4
112,184 + +0.6
112,185 - +1.1
112,185 - -0.8
112,185 - +0.2
112,185 - +0.0
112,185 - +1.0
112,185 - -0.5
112,337 + PP_0106 0.20 +0.8
112,337 + PP_0106 0.20 +0.1
112,337 + PP_0106 0.20 -0.1
112,338 - PP_0106 0.20 -0.4
112,392 - PP_0106 0.26 -0.4
112,487 + PP_0106 0.36 -2.9
112,488 - PP_0106 0.37 -0.6
112,488 - PP_0106 0.37 -3.9
112,488 - PP_0106 0.37 -1.1
112,488 - PP_0106 0.37 -0.2
112,497 + PP_0106 0.38 -3.4
112,778 - PP_0106 0.69 +0.5
112,799 + PP_0106 0.72 +2.2
112,799 + PP_0106 0.72 +0.0
112,800 - PP_0106 0.72 +0.9
112,802 + PP_0106 0.72 +0.9
112,802 + PP_0106 0.72 +0.3
112,802 + PP_0106 0.72 +0.7
112,803 - PP_0106 0.72 +0.5
112,811 + PP_0106 0.73 -3.3
112,812 - PP_0106 0.73 +1.1
112,814 - PP_0106 0.73 -0.2
112,847 + PP_0106 0.77 +0.7
112,848 - PP_0106 0.77 -0.3
112,882 - PP_0106 0.81 -2.2
112,991 + -0.5
113,039 + -1.6
113,039 + +0.1
113,039 + +0.8
113,040 - -1.4
113,052 + -2.2
113,065 - +0.3
113,065 - -0.8
113,139 + PP_5427 0.28 +0.8
113,139 + PP_5427 0.28 +0.6
113,139 + PP_5427 0.28 -0.0
113,139 + PP_5427 0.28 -0.0
113,139 + PP_5427 0.28 -2.0
113,140 - PP_5427 0.28 -1.7
113,140 - PP_5427 0.28 -0.0
113,140 - PP_5427 0.28 -0.3
113,140 - PP_5427 0.28 +0.4

Or see this region's nucleotide sequence