Strain Fitness in Pseudomonas putida KT2440 around PP_t64

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
1,605,552	+		PP_1407	0.59	-0.1
1,605,624	+		PP_1407	0.63	-0.1
1,606,047	-		PP_1407	0.88	-2.8
1,606,060	+		PP_1407	0.89	-0.4
1,606,075	-		PP_1407	0.90	-0.6
1,606,087	+				-0.5
1,606,087	+				+0.8
1,606,088	-				+0.2
1,606,097	-				+0.1
1,606,097	-				-0.1
1,606,097	-				+0.4
1,606,126	+				-0.2
1,606,267	+				-0.2
1,606,291	-				-0.7
1,606,291	-				-0.1
1,606,356	+				-2.3
1,606,357	-				+0.3
1,606,492	+		PP_t64	0.42	-0.2
1,606,493	-		PP_t64	0.43	-1.2
1,606,526	+		PP_t64	0.88	-0.3
1,606,526	+				+0.3
1,606,526	+		PP_t64	0.88	-1.8
1,606,527	-				+0.6
1,606,527	-				-0.4
1,606,528	+				+0.0
1,606,529	-				-1.4
1,606,585	+				+0.6
1,606,588	-				-0.6
1,606,628	+				+0.6
1,606,629	-				+0.3
1,606,687	-				+0.5
1,606,861	-		PP_1408	0.24	+1.2
1,606,903	+		PP_1408	0.29	-0.4
1,606,977	+		PP_1408	0.37	+0.4
1,607,010	+		PP_1408	0.41	-0.3
1,607,011	-				+0.2
1,607,011	-		PP_1408	0.41	+0.1
1,607,011	-		PP_1408	0.41	+0.3
1,607,100	+		PP_1408	0.51	+0.3
1,607,100	+		PP_1408	0.51	-0.3
1,607,100	+		PP_1408	0.51	+0.1
1,607,100	+		PP_1408	0.51	+0.0
1,607,122	-		PP_1408	0.54	+1.5
1,607,181	+		PP_1408	0.60	+0.3
1,607,282	-		PP_1408	0.72	+0.1
1,607,282	-		PP_1408	0.72	-0.3
1,607,346	+		PP_1408	0.79	+1.0
1,607,346	+		PP_1408	0.79	-0.1
1,607,346	+				-0.6
1,607,347	-		PP_1408	0.79	+0.1
1,607,389	+		PP_1408	0.84	+0.6
1,607,393	+		PP_1408	0.84	-0.9
1,607,393	+		PP_1408	0.84	-0.1
1,607,394	-		PP_1408	0.84	-0.5
1,607,472	+				+1.1
1,607,485	-				-0.3
1,607,514	-				+0.4
1,607,514	-				-0.2