Strain Fitness in Pseudomonas putida KT2440 around PP_5204

Experiment: R2A with Fusaric 240 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_5202 and PP_5203 are separated by 322 nucleotidesPP_5203 and PP_5204 are separated by 19 nucleotidesPP_5204 and PP_5205 are separated by 34 nucleotidesPP_5205 and PP_5206 are separated by 95 nucleotides PP_5202: PP_5202 - putative cell division protein, at 5,934,337 to 5,934,657 _5202 PP_5203: PP_5203 - 5-formyltetrahydrofolate cyclo-ligase, at 5,934,980 to 5,935,588 _5203 PP_5204: PP_5204 - conserved protein of unknown function, at 5,935,608 to 5,935,904 _5204 PP_5205: PP_5205 - conserved protein of unknown function, at 5,935,939 to 5,936,388 _5205 PP_5206: PP_5206 - putative translation-related protein, at 5,936,484 to 5,937,443 _5206 Position (kb) 5935 5936Strain fitness (log2 ratio) -2 -1 0 1at 5934.619 kb on - strand, within PP_5202at 5934.642 kb on + strandat 5934.665 kb on - strandat 5934.702 kb on + strandat 5934.703 kb on - strandat 5934.703 kb on - strandat 5934.826 kb on - strandat 5934.842 kb on + strandat 5934.903 kb on + strandat 5934.903 kb on + strandat 5934.904 kb on - strandat 5934.904 kb on - strandat 5934.917 kb on - strandat 5934.946 kb on + strandat 5935.014 kb on + strandat 5935.014 kb on + strandat 5935.015 kb on - strandat 5935.048 kb on + strand, within PP_5203at 5935.085 kb on + strand, within PP_5203at 5935.140 kb on - strand, within PP_5203at 5935.211 kb on + strand, within PP_5203at 5935.211 kb on + strand, within PP_5203at 5935.212 kb on - strand, within PP_5203at 5935.212 kb on - strand, within PP_5203at 5935.300 kb on + strand, within PP_5203at 5935.366 kb on - strand, within PP_5203at 5935.421 kb on + strand, within PP_5203at 5935.421 kb on + strand, within PP_5203at 5935.421 kb on + strand, within PP_5203at 5935.421 kb on + strand, within PP_5203at 5935.422 kb on - strand, within PP_5203at 5935.422 kb on - strand, within PP_5203at 5935.422 kb on - strand, within PP_5203at 5935.422 kb on - strand, within PP_5203at 5935.439 kb on + strand, within PP_5203at 5935.440 kb on - strand, within PP_5203at 5935.440 kb on - strand, within PP_5203at 5935.572 kb on - strandat 5935.607 kb on - strandat 5935.645 kb on + strand, within PP_5204at 5935.646 kb on - strand, within PP_5204at 5935.646 kb on - strand, within PP_5204at 5935.691 kb on + strand, within PP_5204at 5935.749 kb on - strand, within PP_5204at 5935.791 kb on + strand, within PP_5204at 5935.791 kb on + strand, within PP_5204at 5935.831 kb on - strand, within PP_5204at 5935.910 kb on + strandat 5935.911 kb on - strandat 5936.032 kb on + strand, within PP_5205at 5936.032 kb on + strand, within PP_5205at 5936.032 kb on + strand, within PP_5205at 5936.032 kb on + strand, within PP_5205at 5936.033 kb on - strand, within PP_5205at 5936.033 kb on - strand, within PP_5205at 5936.033 kb on - strand, within PP_5205at 5936.033 kb on - strand, within PP_5205at 5936.086 kb on + strand, within PP_5205at 5936.087 kb on - strand, within PP_5205at 5936.183 kb on - strand, within PP_5205at 5936.243 kb on + strand, within PP_5205at 5936.243 kb on + strand, within PP_5205at 5936.243 kb on + strand, within PP_5205at 5936.243 kb on + strand, within PP_5205at 5936.244 kb on - strand, within PP_5205at 5936.244 kb on - strand, within PP_5205at 5936.391 kb on - strandat 5936.398 kb on + strandat 5936.399 kb on - strandat 5936.501 kb on + strandat 5936.557 kb on - strandat 5936.707 kb on + strand, within PP_5206at 5936.787 kb on + strand, within PP_5206

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL
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5,934,619 - PP_5202 0.88 +0.3
5,934,642 + -0.6
5,934,665 - +0.1
5,934,702 + -0.9
5,934,703 - +0.1
5,934,703 - -0.2
5,934,826 - -1.7
5,934,842 + -2.6
5,934,903 + +0.9
5,934,903 + -0.5
5,934,904 - -0.1
5,934,904 - -0.8
5,934,917 - -1.9
5,934,946 + +0.1
5,935,014 + -0.8
5,935,014 + -0.3
5,935,015 - -1.0
5,935,048 + PP_5203 0.11 +0.6
5,935,085 + PP_5203 0.17 -0.2
5,935,140 - PP_5203 0.26 +0.4
5,935,211 + PP_5203 0.38 -0.9
5,935,211 + PP_5203 0.38 -1.1
5,935,212 - PP_5203 0.38 -0.4
5,935,212 - PP_5203 0.38 -1.4
5,935,300 + PP_5203 0.53 -0.5
5,935,366 - PP_5203 0.63 +1.0
5,935,421 + PP_5203 0.72 -0.2
5,935,421 + PP_5203 0.72 +0.3
5,935,421 + PP_5203 0.72 -0.1
5,935,421 + PP_5203 0.72 -0.7
5,935,422 - PP_5203 0.73 -0.7
5,935,422 - PP_5203 0.73 -0.3
5,935,422 - PP_5203 0.73 +0.5
5,935,422 - PP_5203 0.73 -0.4
5,935,439 + PP_5203 0.75 -1.0
5,935,440 - PP_5203 0.76 -0.8
5,935,440 - PP_5203 0.76 +1.3
5,935,572 - -0.6
5,935,607 - -0.5
5,935,645 + PP_5204 0.12 +1.4
5,935,646 - PP_5204 0.13 +0.4
5,935,646 - PP_5204 0.13 -0.3
5,935,691 + PP_5204 0.28 +0.4
5,935,749 - PP_5204 0.47 +1.4
5,935,791 + PP_5204 0.62 +0.6
5,935,791 + PP_5204 0.62 -0.0
5,935,831 - PP_5204 0.75 +0.6
5,935,910 + +0.4
5,935,911 - -0.2
5,936,032 + PP_5205 0.21 -0.9
5,936,032 + PP_5205 0.21 -0.3
5,936,032 + PP_5205 0.21 -0.0
5,936,032 + PP_5205 0.21 -0.3
5,936,033 - PP_5205 0.21 +0.5
5,936,033 - PP_5205 0.21 +0.4
5,936,033 - PP_5205 0.21 +0.7
5,936,033 - PP_5205 0.21 -1.7
5,936,086 + PP_5205 0.33 -0.6
5,936,087 - PP_5205 0.33 +1.0
5,936,183 - PP_5205 0.54 +0.2
5,936,243 + PP_5205 0.68 +0.6
5,936,243 + PP_5205 0.68 -1.1
5,936,243 + PP_5205 0.68 -0.2
5,936,243 + PP_5205 0.68 +0.2
5,936,244 - PP_5205 0.68 -0.3
5,936,244 - PP_5205 0.68 -0.1
5,936,391 - -1.6
5,936,398 + +0.3
5,936,399 - -0.2
5,936,501 + +0.1
5,936,557 - +1.4
5,936,707 + PP_5206 0.23 -0.3
5,936,787 + PP_5206 0.32 +1.1

Or see this region's nucleotide sequence