Experiment: R2A with Fusaric 240 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4907 and PP_4908 are separated by 9 nucleotides PP_4908 and PP_4909 are separated by 75 nucleotides PP_4909 and PP_4910 are separated by 101 nucleotides
PP_4907: PP_4907 - Thiosulfate sulfurtransferase, at 5,577,859 to 5,578,668
_4907
PP_4908: PP_4908 - phosphatidylserine decarboxylase, at 5,578,678 to 5,579,541
_4908
PP_4909: PP_4909 - phosphoserine phosphatase, at 5,579,617 to 5,580,864
_4909
PP_4910: PP_4910 - conserved protein of unknown function, at 5,580,966 to 5,582,423
_4910
Position (kb) 5579
5580
5581 Strain fitness (log2 ratio) -1
0
1
2 at 5579.569 kb on - strand at 5579.569 kb on - strand at 5579.569 kb on - strand at 5579.654 kb on + strand at 5579.655 kb on - strand at 5579.927 kb on + strand, within PP_4909 at 5579.927 kb on + strand, within PP_4909 at 5579.927 kb on + strand, within PP_4909 at 5579.927 kb on + strand, within PP_4909 at 5579.928 kb on - strand, within PP_4909 at 5579.928 kb on - strand, within PP_4909 at 5579.928 kb on - strand, within PP_4909 at 5579.966 kb on + strand, within PP_4909 at 5579.966 kb on + strand, within PP_4909 at 5579.966 kb on + strand, within PP_4909 at 5579.966 kb on + strand, within PP_4909 at 5579.967 kb on - strand, within PP_4909 at 5579.967 kb on - strand, within PP_4909 at 5579.967 kb on - strand, within PP_4909 at 5579.967 kb on - strand, within PP_4909 at 5579.970 kb on + strand, within PP_4909 at 5579.999 kb on + strand, within PP_4909 at 5580.000 kb on - strand, within PP_4909 at 5580.000 kb on - strand, within PP_4909 at 5580.467 kb on + strand, within PP_4909 at 5580.538 kb on - strand, within PP_4909 at 5580.576 kb on - strand, within PP_4909 at 5580.576 kb on - strand, within PP_4909 at 5580.600 kb on - strand, within PP_4909 at 5580.738 kb on + strand, within PP_4909 at 5580.867 kb on + strand at 5580.951 kb on + strand at 5580.951 kb on + strand at 5581.857 kb on + strand, within PP_4910 at 5581.857 kb on + strand, within PP_4910
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL remove 5,579,569 - -0.4 5,579,569 - -0.5 5,579,569 - +0.2 5,579,654 + +0.4 5,579,655 - +0.0 5,579,927 + PP_4909 0.25 +0.8 5,579,927 + PP_4909 0.25 +0.9 5,579,927 + PP_4909 0.25 +0.2 5,579,927 + PP_4909 0.25 +0.7 5,579,928 - PP_4909 0.25 -0.7 5,579,928 - PP_4909 0.25 +1.2 5,579,928 - PP_4909 0.25 +1.1 5,579,966 + PP_4909 0.28 +1.0 5,579,966 + PP_4909 0.28 -0.5 5,579,966 + PP_4909 0.28 +1.3 5,579,966 + PP_4909 0.28 +1.6 5,579,967 - PP_4909 0.28 +0.2 5,579,967 - PP_4909 0.28 +1.5 5,579,967 - PP_4909 0.28 +0.7 5,579,967 - PP_4909 0.28 +0.7 5,579,970 + PP_4909 0.28 -0.4 5,579,999 + PP_4909 0.31 +1.4 5,580,000 - PP_4909 0.31 -1.0 5,580,000 - PP_4909 0.31 +0.9 5,580,467 + PP_4909 0.68 -0.9 5,580,538 - PP_4909 0.74 +0.0 5,580,576 - PP_4909 0.77 +1.2 5,580,576 - PP_4909 0.77 +1.2 5,580,600 - PP_4909 0.79 +0.3 5,580,738 + PP_4909 0.90 +2.5 5,580,867 + -0.7 5,580,951 + -0.1 5,580,951 + -1.0 5,581,857 + PP_4910 0.61 +1.3 5,581,857 + PP_4910 0.61 -0.4
Or see this region's nucleotide sequence