Strain Fitness in Pseudomonas putida KT2440 around PP_4905

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
5,574,554	+		PP_4904	0.29	+1.0
5,574,648	+		PP_4904	0.38	+0.7
5,574,653	+		PP_4904	0.38	+0.6
5,574,672	-		PP_4904	0.40	-0.8
5,574,750	+		PP_4904	0.48	+0.6
5,574,751	-		PP_4904	0.48	+1.6
5,574,761	+		PP_4904	0.49	+1.0
5,574,761	+		PP_4904	0.49	+0.5
5,574,762	-		PP_4904	0.49	+0.9
5,574,826	-		PP_4904	0.55	+1.2
5,575,076	+		PP_4904	0.79	+0.5
5,575,076	+		PP_4904	0.79	+1.4
5,575,076	+		PP_4904	0.79	-0.2
5,575,076	+		PP_4904	0.79	+0.9
5,575,077	-		PP_4904	0.79	+0.4
5,575,077	-		PP_4904	0.79	-1.0
5,575,077	-		PP_4904	0.79	+1.5
5,575,104	+		PP_4904	0.82	-0.2
5,575,104	+		PP_4904	0.82	-1.1
5,575,118	+		PP_4904	0.83	-0.1
5,575,119	-		PP_4904	0.83	+1.7
5,575,119	-		PP_4904	0.83	+0.8
5,575,353	-				-0.1
5,575,499	+		PP_4905	0.24	+1.3
5,575,500	-		PP_4905	0.24	+1.6
5,575,512	+		PP_4905	0.25	+0.5
5,575,525	-		PP_4905	0.27	+0.1
5,575,543	+		PP_4905	0.29	+1.3
5,575,543	+		PP_4905	0.29	-0.2
5,575,543	+		PP_4905	0.29	-0.3
5,575,543	+		PP_4905	0.29	-0.2
5,575,544	-		PP_4905	0.29	+1.1
5,575,544	-		PP_4905	0.29	-0.0
5,575,638	+				+0.5
5,575,766	+		PP_4905	0.55	+0.2
5,575,815	-		PP_4905	0.61	+1.6
5,575,929	-		PP_4905	0.74	+0.7
5,576,120	-				-0.2
5,576,142	+				+0.2
5,576,142	+				-0.7
5,576,142	+				+0.2
5,576,148	+				+0.1
5,576,148	+				-2.6
5,576,148	+				-0.3
5,576,149	-				+0.6
5,576,149	-				+0.3
5,576,149	-				-0.1
5,576,180	+				+0.1
5,576,196	+				-0.8
5,576,197	-				+0.4
5,576,211	-				+0.7
5,576,211	-				+0.8
5,576,211	-				-0.9
5,576,214	+				+0.3
5,576,215	-				-0.3
5,576,236	+				-0.4
5,576,236	+				-0.2
5,576,236	+				-0.7
5,576,237	-				+0.1
5,576,237	-				-2.6
5,576,239	-				-0.3
5,576,239	-				+0.6
5,576,322	+				+0.5
5,576,322	+				+1.3
5,576,379	-				-0.5
5,576,379	-				+0.4
5,576,379	-				-0.0
5,576,379	-				+0.2
5,576,620	-		PP_4906	0.22	+0.4
5,576,883	-		PP_4906	0.39	+0.5
5,576,883	-		PP_4906	0.39	+0.6
5,577,054	+		PP_4906	0.50	-0.3
5,577,054	+		PP_4906	0.50	+0.3
5,577,054	+		PP_4906	0.50	+0.9
5,577,126	+		PP_4906	0.55	-0.5
5,577,126	+		PP_4906	0.55	+0.2
5,577,126	+		PP_4906	0.55	+0.5
5,577,126	+		PP_4906	0.55	+0.6
5,577,127	-		PP_4906	0.55	+0.2