Strain Fitness in Pseudomonas putida KT2440 around PP_4604

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
5,224,629	+				-0.5
5,224,641	+				+0.5
5,224,676	+				-0.3
5,224,676	+				-1.5
5,224,677	-				-0.5
5,224,677	-				+0.5
5,224,685	-				-1.3
5,224,845	-				-0.8
5,224,845	-		PP_4604	0.19	+0.7
5,224,886	+		PP_4604	0.23	+0.3
5,224,886	+		PP_4604	0.23	+0.7
5,224,893	+		PP_4604	0.24	+1.2
5,224,894	-		PP_4604	0.24	+0.1
5,224,941	+		PP_4604	0.29	+1.3
5,224,941	+		PP_4604	0.29	+0.2
5,224,942	-		PP_4604	0.30	+0.6
5,224,943	+		PP_4604	0.30	+1.0
5,224,943	+		PP_4604	0.30	+0.3
5,224,944	-		PP_4604	0.30	+1.3
5,225,015	+		PP_4604	0.38	+0.3
5,225,132	+		PP_4604	0.51	-0.4
5,225,263	-		PP_4604	0.65	+0.8
5,225,428	-		PP_4604	0.83	+0.0
5,225,506	+				+0.2
5,225,507	-				+0.3
5,225,507	-				-1.0
5,225,507	-				+0.7
5,225,561	+				+0.8
5,225,562	-				+0.2
5,225,562	-				-2.1
5,225,640	-				+1.3
5,225,736	+				-0.2
5,225,895	+		PP_4605	0.15	+1.5
5,225,907	-		PP_4605	0.16	-0.5
5,225,928	+		PP_4605	0.19	+0.1
5,225,928	+		PP_4605	0.19	+0.1
5,225,929	-		PP_4605	0.19	-0.3
5,226,063	+		PP_4605	0.34	+0.7
5,226,063	+		PP_4605	0.34	+1.6
5,226,063	+		PP_4605	0.34	+0.2
5,226,063	+		PP_4605	0.34	+1.3
5,226,063	+		PP_4605	0.34	-0.4
5,226,063	+		PP_4605	0.34	+0.7
5,226,063	+		PP_4605	0.34	-0.4
5,226,064	-		PP_4605	0.34	-1.0
5,226,064	-		PP_4605	0.34	+0.3
5,226,064	-		PP_4605	0.34	+1.0
5,226,064	-		PP_4605	0.34	-0.6
5,226,064	-		PP_4605	0.34	-0.0
5,226,064	-		PP_4605	0.34	+0.8
5,226,064	-		PP_4605	0.34	+0.7
5,226,064	-		PP_4605	0.34	-0.5
5,226,097	+		PP_4605	0.38	+0.8
5,226,097	+		PP_4605	0.38	+0.5
5,226,097	+		PP_4605	0.38	+1.3
5,226,098	-		PP_4605	0.38	-0.9
5,226,346	-		PP_4605	0.67	+0.2
5,226,466	-		PP_4605	0.80	-0.1
5,226,466	-		PP_4605	0.80	+0.0
5,226,518	-		PP_4605	0.86	+0.1
5,226,518	-		PP_4605	0.86	+1.3
5,226,541	+		PP_4605	0.89	-0.1
5,226,542	-		PP_4605	0.89	+0.2