Strain Fitness in Pseudomonas putida KT2440 around PP_4284

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,873,964	+		PP_4283	0.25	-0.9
4,873,965	-				+2.3
4,874,450	+				-1.3
4,874,558	+				-0.7
4,874,559	-				-2.3
4,874,571	+				-2.4
4,874,571	+				-1.0
4,874,571	+				+0.2
4,874,572	-				+0.5
4,874,572	-				+0.5
4,874,606	-				-0.4
4,874,606	-				-1.7
4,874,609	+				-0.3
4,874,610	-				-3.4
4,874,610	-				-0.0
4,874,610	-				+2.2
4,874,610	-				-1.6
4,874,610	-				+0.3
4,874,611	+				-0.1
4,874,611	+				-0.4
4,874,611	+				-0.3
4,874,611	+				-0.3
4,874,611	+				-0.5
4,874,611	+				-1.1
4,874,612	-				+0.6
4,874,612	-				-0.8
4,874,612	-				-0.2
4,874,612	-				+0.1
4,874,612	-				-0.5
4,874,612	-				+0.5
4,874,612	-				+0.8
4,874,612	-				-0.9
4,874,613	+				+1.4
4,874,613	+				-2.5
4,874,613	+				+0.1
4,874,613	+				-1.1
4,874,614	-				-0.1
4,874,614	-				+0.6
4,874,614	-				+0.6
4,874,614	-				-2.5
4,874,614	-				+0.9
4,874,614	-				-1.1
4,874,622	+				-2.5
4,874,622	+				+0.0
4,874,622	+				-0.7
4,874,623	-				+0.7
4,874,839	+				+0.4
4,874,840	-				+0.2
4,874,963	+		PP_4284	0.11	+0.7
4,874,963	+		PP_4284	0.11	+0.2
4,874,963	+		PP_4284	0.11	+0.2
4,874,963	+		PP_4284	0.11	-1.3
4,874,963	+		PP_4284	0.11	-1.0
4,874,964	-		PP_4284	0.11	-2.7
4,875,127	+		PP_4284	0.23	-0.6
4,875,127	+		PP_4284	0.23	-1.3
4,875,132	-		PP_4284	0.24	-0.2
4,875,156	-		PP_4284	0.25	-0.4
4,875,184	-		PP_4284	0.27	+0.3
4,875,431	+		PP_4284	0.46	+1.4
4,875,432	-		PP_4284	0.46	-0.7
4,875,779	+		PP_4284	0.72	-1.3
4,875,779	+		PP_4284	0.72	-0.4
4,875,779	+		PP_4284	0.72	-1.2
4,875,780	-		PP_4284	0.72	-1.0
4,875,780	-		PP_4284	0.72	-1.4
4,875,780	-		PP_4284	0.72	-0.7
4,875,780	-		PP_4284	0.72	-1.8
4,875,780	-		PP_4284	0.72	-0.4
4,875,780	-		PP_4284	0.72	-0.1
4,875,841	-		PP_4284	0.76	-0.3
4,875,841	-		PP_4284	0.76	-0.3
4,875,841	-		PP_4284	0.76	+0.0
4,875,841	-		PP_4284	0.76	-0.9
4,875,899	+		PP_4284	0.80	-0.5
4,875,900	-		PP_4284	0.81	-2.2
4,875,900	-		PP_4284	0.81	-0.5
4,875,923	+		PP_4284	0.82	-0.7
4,875,923	+		PP_4284	0.82	-0.9
4,875,923	+		PP_4284	0.82	+0.0
4,875,923	+		PP_4284	0.82	-0.6
4,875,923	+		PP_4284	0.82	+1.1
4,875,924	-		PP_4284	0.82	-0.8
4,875,924	-		PP_4284	0.82	-0.1
4,876,042	+				+0.4
4,876,042	+				-1.2
4,876,043	-				-0.9
4,876,064	+				-0.1
4,876,064	+				-1.6
4,876,064	+				+0.5
4,876,064	+				-0.6
4,876,065	-				+0.0
4,876,065	-				-0.3
4,876,065	-				+1.5
4,876,094	+				-0.1
4,876,095	-				+1.1
4,876,095	-				-0.2
4,876,199	+				-0.4
4,876,212	-				+0.2
4,876,212	-				+0.5
4,876,290	-				-1.1
4,876,311	+				+0.6
4,876,335	-				-0.5
4,876,346	+				+0.8
4,876,347	-				+1.5
4,876,347	-				-0.0
4,876,446	+				+0.8
4,876,446	+				+0.1
4,876,481	-				+0.0
4,876,481	-				-0.4
4,876,575	+				-0.2
4,876,575	+				-0.4
4,876,576	-				-0.2
4,876,576	-				-1.7
4,876,576	-				-0.6
4,876,589	+				+1.6
4,876,600	+				-0.2
4,876,600	+				-0.4
4,876,600	+				+0.4
4,876,601	-				-0.6
4,876,601	-				+0.2
4,876,601	-				-0.3
4,876,612	+				-3.1
4,876,612	+				-0.5
4,876,622	-				+0.8
4,876,622	-				-1.0
4,876,622	-				+0.3
4,876,742	-		PP_4285	0.40	-2.5
4,876,744	+		PP_4285	0.41	-0.3
4,876,744	+		PP_4285	0.41	+0.0
4,876,744	+		PP_4285	0.41	-0.4
4,876,745	-		PP_4285	0.41	-0.1
4,876,745	-		PP_4285	0.41	-0.5
4,876,745	-		PP_4285	0.41	-1.7
4,876,745	-		PP_4285	0.41	-1.0
4,876,771	+		PP_4285	0.49	-0.8
4,876,929	+				-0.2
4,876,929	+				+1.0
4,877,011	-				-0.9
4,877,042	-				-0.1
4,877,133	+				+0.2
4,877,133	+				+1.8
4,877,134	-				-0.3
4,877,134	-				+0.7
4,877,144	+				-1.6
4,877,144	+				-0.2
4,877,144	+				-3.5
4,877,144	+				-1.1
4,877,144	+				+0.6
4,877,145	-				+0.2
4,877,145	-				+0.4
4,877,145	-				-0.1
4,877,145	-				+0.1
4,877,145	-				-1.5