Strain Fitness in Pseudomonas putida KT2440 around PP_4244

Experiment: R2A with Fusaric 240 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 240 ug/mL
4,830,534	+				-0.0
4,830,534	+				+0.1
4,830,535	-				-0.4
4,830,673	-				+0.6
4,830,673	-				-1.5
4,830,906	+				-1.1
4,830,933	+				-1.2
4,830,934	-				+0.3
4,830,934	-				-0.2
4,830,960	+				+1.7
4,830,960	+				+0.5
4,831,214	+				+0.4
4,831,214	+				-0.3
4,831,236	-				+0.3
4,831,253	+				-1.3
4,831,253	+				+1.5
4,831,254	-				-1.0
4,831,254	-				+0.9
4,831,269	+				+0.8
4,831,269	+				+0.7
4,831,269	+				+0.7
4,831,269	+				+0.4
4,831,270	-				+0.1
4,831,270	-				-0.4
4,831,270	-				+0.8
4,831,270	-				+1.4
4,831,270	-				-0.2
4,831,322	-				-0.1
4,831,322	-				-0.6
4,831,322	-				-0.7
4,831,331	+				-0.5
4,831,338	+				+1.3
4,831,362	-				-0.2
4,831,422	+				+1.0
4,831,422	+				-0.5
4,831,439	+				-3.6
4,831,439	+				+1.5
4,831,440	-				+0.1
4,831,508	+				-1.1
4,831,509	-				+1.2
4,831,509	-				+0.0
4,831,518	+				-0.2
4,831,518	+				-0.4
4,831,518	+				+0.3
4,831,536	-				-0.4
4,831,536	-				+1.6
4,831,536	-				+1.2
4,831,622	+		PP_4244	0.24	-0.2
4,831,622	+		PP_4244	0.24	+0.9
4,831,623	-		PP_4244	0.24	+0.5
4,831,623	-		PP_4244	0.24	+1.4
4,831,691	-		PP_4244	0.37	+0.9
4,831,691	-		PP_4244	0.37	+0.9
4,831,730	+		PP_4244	0.44	+0.3
4,831,730	-		PP_4244	0.44	+0.4
4,831,756	+		PP_4244	0.49	+0.6
4,831,757	-		PP_4244	0.49	+0.5
4,831,757	-		PP_4244	0.49	-0.1
4,831,886	-		PP_4244	0.74	+0.8
4,831,886	-		PP_4244	0.74	+0.1
4,831,900	+		PP_4244	0.76	+1.1
4,831,901	-		PP_4244	0.76	+1.0
4,831,908	+		PP_4244	0.78	+0.2
4,831,909	-		PP_4244	0.78	+0.2
4,831,909	-		PP_4244	0.78	-1.7
4,831,909	-		PP_4244	0.78	+0.8
4,832,087	-				+0.8
4,832,087	-				-0.1
4,832,087	-				+0.2
4,832,087	-				-0.5
4,832,089	+				-0.5
4,832,090	-				+0.6
4,832,105	+				-3.0
4,832,143	+				+0.7
4,832,144	-				-0.2
4,832,152	+				-0.8
4,832,153	-				-0.1
4,832,153	-				+0.5
4,832,171	+				-2.7
4,832,172	-				+0.1
4,832,172	-				+0.0
4,832,289	+		PP_4245	0.11	-0.0
4,832,290	-		PP_4245	0.11	-1.3
4,832,364	+		PP_4245	0.18	-0.4
4,832,365	-		PP_4245	0.19	-0.8
4,832,365	-		PP_4245	0.19	+0.3
4,832,434	+		PP_4245	0.25	-0.9
4,832,434	+		PP_4245	0.25	+0.3
4,832,435	-		PP_4245	0.25	+0.8
4,832,435	-		PP_4245	0.25	+0.4
4,832,440	+		PP_4245	0.26	-0.6
4,832,451	+		PP_4245	0.27	+0.5
4,832,467	-		PP_4245	0.29	-0.6
4,832,499	+		PP_4245	0.32	-0.8
4,832,554	+		PP_4245	0.37	-1.3
4,832,554	+		PP_4245	0.37	-0.5
4,832,555	-		PP_4245	0.37	+0.3
4,832,555	-		PP_4245	0.37	-0.4
4,832,584	-		PP_4245	0.40	-0.4
4,832,805	+		PP_4245	0.62	-0.8
4,832,805	+		PP_4245	0.62	+0.8
4,832,807	+		PP_4245	0.62	-0.8
4,832,807	+		PP_4245	0.62	-3.0
4,832,807	+		PP_4245	0.62	+0.6
4,832,874	+		PP_4245	0.69	+0.6
4,832,874	+		PP_4245	0.69	-0.2
4,832,875	-		PP_4245	0.69	-2.7
4,832,988	+		PP_4245	0.80	+0.1
4,832,989	-		PP_4245	0.80	-0.9