Experiment: R2A with Fusaric 240 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4222 and PP_4223 are separated by 105 nucleotides PP_4223 and PP_4224 are separated by 217 nucleotides
PP_4222: PP_4222 - putative SyrP protein, at 4,793,995 to 4,794,978
_4222
PP_4223: PP_4223 - diaminobutyrate-2-oxoglutarate transaminase, at 4,795,084 to 4,796,442
_4223
PP_4224: PP_4224 - Sensor histidine kinase, at 4,796,660 to 4,797,982
_4224
Position (kb) 4795
4796
4797 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4794.200 kb on + strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.201 kb on - strand, within PP_4222 at 4794.266 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.305 kb on - strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.410 kb on + strand, within PP_4222 at 4794.422 kb on - strand, within PP_4222 at 4794.479 kb on + strand at 4794.480 kb on - strand, within PP_4222 at 4794.491 kb on + strand, within PP_4222 at 4794.491 kb on + strand, within PP_4222 at 4794.492 kb on - strand, within PP_4222 at 4794.523 kb on + strand, within PP_4222 at 4794.523 kb on + strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.606 kb on - strand, within PP_4222 at 4794.638 kb on + strand, within PP_4222 at 4794.638 kb on + strand, within PP_4222 at 4794.681 kb on - strand, within PP_4222 at 4794.695 kb on + strand, within PP_4222 at 4794.695 kb on + strand, within PP_4222 at 4794.696 kb on - strand, within PP_4222 at 4794.696 kb on - strand, within PP_4222 at 4794.740 kb on + strand, within PP_4222 at 4794.923 kb on - strand at 4794.970 kb on + strand at 4794.970 kb on + strand at 4794.970 kb on + strand at 4794.971 kb on - strand at 4794.971 kb on - strand at 4794.971 kb on - strand at 4795.096 kb on + strand at 4795.887 kb on - strand, within PP_4223 at 4795.893 kb on - strand, within PP_4223 at 4795.998 kb on - strand, within PP_4223 at 4796.363 kb on + strand at 4796.453 kb on - strand at 4796.488 kb on + strand at 4796.489 kb on - strand at 4796.489 kb on - strand at 4796.489 kb on - strand at 4796.681 kb on + strand at 4796.710 kb on + strand at 4796.711 kb on - strand at 4796.711 kb on - strand at 4796.711 kb on - strand at 4796.711 kb on - strand at 4796.994 kb on + strand, within PP_4224 at 4796.994 kb on + strand, within PP_4224 at 4797.031 kb on + strand, within PP_4224 at 4797.129 kb on - strand, within PP_4224 at 4797.129 kb on - strand, within PP_4224 at 4797.129 kb on - strand, within PP_4224
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 240 ug/mL remove 4,794,200 + PP_4222 0.21 -0.0 4,794,201 - PP_4222 0.21 -0.1 4,794,201 - PP_4222 0.21 -0.0 4,794,201 - PP_4222 0.21 +0.3 4,794,266 - PP_4222 0.28 -0.4 4,794,305 - PP_4222 0.32 -1.0 4,794,305 - PP_4222 0.32 +0.0 4,794,305 - PP_4222 0.32 +0.8 4,794,410 + PP_4222 0.42 -0.8 4,794,410 + PP_4222 0.42 +0.7 4,794,410 + PP_4222 0.42 +0.1 4,794,422 - PP_4222 0.43 -2.5 4,794,479 + -0.5 4,794,480 - PP_4222 0.49 +0.5 4,794,491 + PP_4222 0.50 -0.7 4,794,491 + PP_4222 0.50 +0.8 4,794,492 - PP_4222 0.51 +0.4 4,794,523 + PP_4222 0.54 -0.5 4,794,523 + PP_4222 0.54 -0.3 4,794,606 - PP_4222 0.62 +0.5 4,794,606 - PP_4222 0.62 +0.1 4,794,606 - PP_4222 0.62 +1.5 4,794,606 - PP_4222 0.62 -1.0 4,794,638 + PP_4222 0.65 +0.3 4,794,638 + PP_4222 0.65 -0.2 4,794,681 - PP_4222 0.70 +1.0 4,794,695 + PP_4222 0.71 +0.3 4,794,695 + PP_4222 0.71 +0.7 4,794,696 - PP_4222 0.71 +0.2 4,794,696 - PP_4222 0.71 -2.4 4,794,740 + PP_4222 0.76 -0.2 4,794,923 - +0.5 4,794,970 + -0.1 4,794,970 + -1.4 4,794,970 + +1.3 4,794,971 - -2.2 4,794,971 - +1.1 4,794,971 - +0.2 4,795,096 + -1.8 4,795,887 - PP_4223 0.59 +1.1 4,795,893 - PP_4223 0.60 +0.6 4,795,998 - PP_4223 0.67 +0.3 4,796,363 + +0.9 4,796,453 - +1.8 4,796,488 + +0.1 4,796,489 - -0.9 4,796,489 - -0.3 4,796,489 - -0.2 4,796,681 + +2.0 4,796,710 + -0.5 4,796,711 - +0.6 4,796,711 - -1.6 4,796,711 - -0.2 4,796,711 - -1.3 4,796,994 + PP_4224 0.25 +0.8 4,796,994 + PP_4224 0.25 +0.0 4,797,031 + PP_4224 0.28 -0.6 4,797,129 - PP_4224 0.35 +0.6 4,797,129 - PP_4224 0.35 +0.6 4,797,129 - PP_4224 0.35 -0.2
Or see this region's nucleotide sequence